Metabolic networks: how to identify key components in the regulation of metabolism and growth

M Stitt, R Sulpice, J Keurentjes - Plant physiology, 2010 - academic.oup.com
Plants display enormous diversity in their metabolism. Although the biosynthesis and
function of the myriad plant metabolites have been studied for decades, we have little …

Metabolomics integrated with transcriptomics: assessing systems response to sulfur‐deficiency stress

R Hoefgen, VJ Nikiforova - Physiologia Plantarum, 2008 - Wiley Online Library
Sulfur‐containing amino acids, cysteine and methionine synthesized in plants are essential
for human and animal nutrition. That is why understanding of how inorganic sulfur is taken …

Gene and metabolite regulatory network analysis of early develo** fruit tissues highlights new candidate genes for the control of tomato fruit composition and …

F Mounet, A Moing, V Garcia, J Petit… - Plant …, 2009 - academic.oup.com
Variations in early fruit development and composition may have major impacts on the taste
and the overall quality of ripe tomato (Solanum lycopersicum) fruit. To get insights into the …

Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit …

J Rohrmann, T Tohge, R Alba, S Osorio… - The Plant …, 2011 - Wiley Online Library
Maturation of fleshy fruits such as tomato (Solanum lycopersicum) is subject to tight genetic
control. Here we describe the development of a quantitative real‐time PCR platform that …

Competing endogenous RNA networks underlying anatomical and physiological characteristics of poplar wood in acclimation to low nitrogen availability

Y Lu, S Deng, Z Li, J Wu, Q Liu, W Liu… - Plant and Cell …, 2019 - academic.oup.com
Although poplar plantations are often established on nitrogen (N)-poor soil, the
physiological and molecular mechanisms underlying wood properties of poplars in …

Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in …

E Allen, A Moing, TMD Ebbels, M Maucourt… - BMC systems …, 2010 - Springer
Background Holistic profiling and systems biology studies of nutrient availability are
providing more and more insight into the mechanisms by which gene expression responds …

Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli – A Systems Approach

J Szymanski, S Jozefczuk, Z Nikoloski, J Selbig… - PLoS one, 2009 - journals.plos.org
Background Biological systems adapt to changing environments by reorganizing their
cellular and physiological program with metabolites representing one important response …

Characterization of dietary protein-dependent amino acid metabolism by linking free amino acids with transcriptional profiles through analysis of correlation

Y Noguchi, N Shikata, Y Furuhata… - Physiological …, 2008 - journals.physiology.org
This study aims to characterize diet-dependent amino acid metabolism by linking profiles of
amino acids concentrations (“aminograms”) with transcript datasets through the analysis of …

[HTML][HTML] Sulfur assimilation and regulation of abiotic stress via OMICS

BA Mir, R Kumari, G Rakhra, P Parihar, R Singh… - Plant Stress, 2024 - Elsevier
Abiotic stress, which includes salinity, drought, heat, and cold, as well as their many
combinations, severely reduces crop productivity across the globe each year. Considering …

Analysis of systemic sulfur metabolism in plants using integrated '-omics' strategies

MY Hirai, K Saito - Molecular BioSystems, 2008 - pubs.rsc.org
Sulfur (S) assimilation by plants plays a key role in the S cycle in nature, and metabolism of
the assimilated S provides various compounds that are useful for animals, including …