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Emerging and evolving concepts in gene essentiality
Gene essentiality is a founding concept of genetics with important implications in both
fundamental and applied research. Multiple screens have been performed over the years in …
fundamental and applied research. Multiple screens have been performed over the years in …
Machine learning approach to gene essentiality prediction: a review
Essential genes are critical for the growth and survival of any organism. The machine
learning approach complements the experimental methods to minimize the resources …
learning approach complements the experimental methods to minimize the resources …
Proteomics-based vaccine targets annotation and design of multi-epitope vaccine against antibiotic-resistant Streptococcus gallolyticus
P Chao, X Zhang, L Zhang, A Yang, Y Wang, X Chen - Scientific reports, 2024 - nature.com
Streptococcus gallolyticus is a non-motile, gram-positive bacterium that causes infective
endocarditis. S. gallolyticus has developed resistance to existing antibiotics, and no vaccine …
endocarditis. S. gallolyticus has developed resistance to existing antibiotics, and no vaccine …
United neighborhood closeness centrality and orthology for predicting essential proteins
Identifying essential proteins plays an important role in disease study, drug design, and
understanding the minimal requirement for cellular life. Computational methods for essential …
understanding the minimal requirement for cellular life. Computational methods for essential …
A computational framework based on ensemble deep neural networks for essential genes identification
Essential genes contain key information of genomes that could be the key to a
comprehensive understanding of life and evolution. Because of their importance, studies of …
comprehensive understanding of life and evolution. Because of their importance, studies of …
Bacterial genome reductions: Tools, applications, and challenges
N LeBlanc, TC Charles - Frontiers in Genome Editing, 2022 - frontiersin.org
Bacterial cells are widely used to produce value-added products due to their versatility, ease
of manipulation, and the abundance of genome engineering tools. However, the efficiency of …
of manipulation, and the abundance of genome engineering tools. However, the efficiency of …
Evolutionary conservation analysis between the essential and nonessential genes in bacterial genomes
Essential genes are thought to be critical for the survival of the organisms under certain
circumstances and the natural selection acting on essential genes is expected to be stricter …
circumstances and the natural selection acting on essential genes is expected to be stricter …
Highlighting the potential of Synechococcus elongatus PCC 7942 as platform to produce α-linolenic acid through an updated genome-scale metabolic modeling
Cyanobacteria are prokaryotic organisms that capture energy from sunlight using oxygenic
photosynthesis and transform CO2 into products of interest such as fatty acids …
photosynthesis and transform CO2 into products of interest such as fatty acids …
Integration of molecular docking and molecular dynamics simulations with subtractive proteomics approach to identify the novel drug targets and their inhibitors in …
P Chao, X Zhang, L Zhang, A Yang, Y Wang… - Scientific Reports, 2024 - nature.com
Streptococcus gallolyticus (Sg) is a non-motile, gram-positive bacterium that causes infective
endocarditis (inflammation of the heart lining). Because Sg has gained resistance to existing …
endocarditis (inflammation of the heart lining). Because Sg has gained resistance to existing …
Molecular drilling to combat salmonella typhi biofilm using L-Asparaginase via multiple targeting process
ABSTRACT Objectives Salmonella Typhi biofilm condition is showing as a major public
health problem due to the development of antibiotic resistance and less available druggable …
health problem due to the development of antibiotic resistance and less available druggable …