Emerging and evolving concepts in gene essentiality

G Rancati, J Moffat, A Typas, N Pavelka - Nature Reviews Genetics, 2018 - nature.com
Gene essentiality is a founding concept of genetics with important implications in both
fundamental and applied research. Multiple screens have been performed over the years in …

Machine learning approach to gene essentiality prediction: a review

O Aromolaran, D Aromolaran, I Isewon… - Briefings in …, 2021 - academic.oup.com
Essential genes are critical for the growth and survival of any organism. The machine
learning approach complements the experimental methods to minimize the resources …

Proteomics-based vaccine targets annotation and design of multi-epitope vaccine against antibiotic-resistant Streptococcus gallolyticus

P Chao, X Zhang, L Zhang, A Yang, Y Wang, X Chen - Scientific reports, 2024 - nature.com
Streptococcus gallolyticus is a non-motile, gram-positive bacterium that causes infective
endocarditis. S. gallolyticus has developed resistance to existing antibiotics, and no vaccine …

United neighborhood closeness centrality and orthology for predicting essential proteins

G Li, M Li, J Wang, Y Li, Y Pan - IEEE/ACM transactions on …, 2018 - ieeexplore.ieee.org
Identifying essential proteins plays an important role in disease study, drug design, and
understanding the minimal requirement for cellular life. Computational methods for essential …

A computational framework based on ensemble deep neural networks for essential genes identification

NQK Le, DT Do, TNK Hung, LHT Lam… - International journal of …, 2020 - mdpi.com
Essential genes contain key information of genomes that could be the key to a
comprehensive understanding of life and evolution. Because of their importance, studies of …

Bacterial genome reductions: Tools, applications, and challenges

N LeBlanc, TC Charles - Frontiers in Genome Editing, 2022 - frontiersin.org
Bacterial cells are widely used to produce value-added products due to their versatility, ease
of manipulation, and the abundance of genome engineering tools. However, the efficiency of …

Evolutionary conservation analysis between the essential and nonessential genes in bacterial genomes

H Luo, F Gao, Y Lin - Scientific reports, 2015 - nature.com
Essential genes are thought to be critical for the survival of the organisms under certain
circumstances and the natural selection acting on essential genes is expected to be stricter …

Highlighting the potential of Synechococcus elongatus PCC 7942 as platform to produce α-linolenic acid through an updated genome-scale metabolic modeling

M Santos-Merino, Á Gargantilla-Becerra… - Frontiers in …, 2023 - frontiersin.org
Cyanobacteria are prokaryotic organisms that capture energy from sunlight using oxygenic
photosynthesis and transform CO2 into products of interest such as fatty acids …

Integration of molecular docking and molecular dynamics simulations with subtractive proteomics approach to identify the novel drug targets and their inhibitors in …

P Chao, X Zhang, L Zhang, A Yang, Y Wang… - Scientific Reports, 2024 - nature.com
Streptococcus gallolyticus (Sg) is a non-motile, gram-positive bacterium that causes infective
endocarditis (inflammation of the heart lining). Because Sg has gained resistance to existing …

Molecular drilling to combat salmonella typhi biofilm using L-Asparaginase via multiple targeting process

A Upadhyay, D Pal, A Kumar - Expert Opinion on Therapeutic …, 2024 - Taylor & Francis
ABSTRACT Objectives Salmonella Typhi biofilm condition is showing as a major public
health problem due to the development of antibiotic resistance and less available druggable …