[HTML][HTML] CADD, AI and ML in drug discovery: A comprehensive review

D Vemula, P Jayasurya, V Sushmitha, YN Kumar… - European Journal of …, 2023 - Elsevier
Computer-aided drug design (CADD) is an emerging field that has drawn a lot of interest
because of its potential to expedite and lower the cost of the drug development process …

Investigating cryptic binding sites by molecular dynamics simulations

A Kuzmanic, GR Bowman… - Accounts of chemical …, 2020 - ACS Publications
Conspectus This Account highlights recent advances and discusses major challenges in
investigations of cryptic (hidden) binding sites by molecular simulations. Cryptic binding …

G-protein activation by a metabotropic glutamate receptor

AB Seven, X Barros-Álvarez, M de Lapeyrière… - Nature, 2021 - nature.com
Family C G-protein-coupled receptors (GPCRs) operate as obligate dimers with extracellular
domains that recognize small ligands, leading to G-protein activation on the transmembrane …

Broadly targeted CD8+ T cell responses restricted by major histocompatibility complex E

SG Hansen, HL Wu, BJ Burwitz, CM Hughes… - Science, 2016 - science.org
Major histocompatibility complex E (MHC-E) is a highly conserved, ubiquitously expressed,
nonclassical MHC class Ib molecule with limited polymorphism that is primarily involved in …

POVME 3.0: software for map** binding pocket flexibility

JR Wagner, J Sørensen, N Hensley… - Journal of chemical …, 2017 - ACS Publications
We present a substantial update to the open-source POVME binding pocket analysis
software. New capabilities of POVME 3.0 include a flexible chemical coloring scheme for …

[HTML][HTML] From structure to clinic: Design of a muscarinic M1 receptor agonist with the potential to treat Alzheimer's disease

AJH Brown, SJ Bradley, FH Marshall, GA Brown… - Cell, 2021 - cell.com
Current therapies for Alzheimer's disease seek to correct for defective cholinergic
transmission by preventing the breakdown of acetylcholine through inhibition of …

Structures of metabotropic GABAB receptor

MM Papasergi-Scott, MJ Robertson, AB Seven… - Nature, 2020 - nature.com
Stimulation of the metabotropic GABAB receptor by γ-aminobutyric acid (GABA) results in
prolonged inhibition of neurotransmission, which is central to brain physiology. GABAB …

Time to target the circadian clock for drug discovery

ES Rasmussen, JS Takahashi, CB Green - Trends in biochemical sciences, 2022 - cell.com
The circadian clock is an intracellular timekee** device that drives daily rhythms in diverse
and extensive processes throughout the body. The clock mechanism comprises a core …

Machine learning reveals the critical interactions for SARS-CoV-2 spike protein binding to ACE2

A Pavlova, Z Zhang, A Acharya, DL Lynch… - The journal of …, 2021 - ACS Publications
SARS-CoV and SARS-CoV-2 bind to the human ACE2 receptor in practically identical
conformations, although several residues of the receptor-binding domain (RBD) differ …

Structure-based drug design strategies and challenges

X Wang, K Song, L Li, L Chen - Current Topics in Medicinal …, 2018 - benthamdirect.com
Over the past ten years, the number of three-dimensional protein structures identified by
advanced science and technology increases, and the gene information becomes more …