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Dynamic and scalable DNA-based information storage
The physical architectures of information storage systems often dictate how information is
encoded, databases are organized, and files are accessed. Here we show that a simple …
encoded, databases are organized, and files are accessed. Here we show that a simple …
BioCRNpyler: Compiling chemical reaction networks from biomolecular parts in diverse contexts
Biochemical interactions in systems and synthetic biology are often modeled with chemical
reaction networks (CRNs). CRNs provide a principled modeling environment capable of …
reaction networks (CRNs). CRNs provide a principled modeling environment capable of …
Dynamic DNA assembly by programmable hybridization chain reaction mimicking tubulin
L Zhang, Y Fu, Y Tong, G **e, S Deng - Nano Letters, 2024 - ACS Publications
Dynamic biological structures involve the continual turnover of molecules within
supramolecular assemblies such as tubulin. Inspired by dynamic biology self-organizing …
supramolecular assemblies such as tubulin. Inspired by dynamic biology self-organizing …
[HTML][HTML] Computing within bacteria: Programming of bacterial behavior by means of a plasmid encoding a perceptron neural network
In nature, bacteria exhibit a limited repertoire of behaviors in response to environmental
changes. Synthetic biology has now opened up the possibility of programming cells or …
changes. Synthetic biology has now opened up the possibility of programming cells or …
Domain-specific programming languages for computational nucleic acid systems
The construction of models of system behavior is of great importance throughout science
and engineering. In bioengineering and bionanotechnology, these often take the form of …
and engineering. In bioengineering and bionanotechnology, these often take the form of …
Solving 0–1 integer programming problem based on DNA strand displacement reaction network
Z Tang, Z Yin, L Wang, J Cui, J Yang… - ACS Synthetic …, 2021 - ACS Publications
Chemical reaction networks (CRNs) based on DNA strand displacement (DSD) can be used
as an effective programming language for solving various mathematical problems. In this …
as an effective programming language for solving various mathematical problems. In this …
A domain-level DNA strand displacement reaction enumerator allowing arbitrary non-pseudoknotted secondary structures
Information technologies enable programmers and engineers to design and synthesize
systems of startling complexity that nonetheless behave as intended. This mastery of …
systems of startling complexity that nonetheless behave as intended. This mastery of …
Molecular communication relays for dynamic cross-regulation of self-sorting fibrillar self-assemblies
S Groeer, K Schumann, S Loescher, A Walther - Science Advances, 2021 - science.org
Structures in living systems cross-regulate via exchange of molecular information to
assemble or disassemble on demand and in a coordinated, signal-triggered fashion. DNA …
assemble or disassemble on demand and in a coordinated, signal-triggered fashion. DNA …
Design of a single-channel chaotic secure communication system implemented by DNA strand displacement
X An, Z Meng, Y Wang, J Sun - ACS Synthetic Biology, 2022 - ACS Publications
DNA strand displacement (DSD) is regarded as a foundation for the construction of
biological computing systems because of the predictability of DNA molecular behaviors …
biological computing systems because of the predictability of DNA molecular behaviors …
Automated leak analysis of nucleic acid circuits
I Zarubiieva, C Spaccasassi, V Kulkarni… - ACS Synthetic …, 2022 - ACS Publications
Nucleic acids are a powerful engineering material that can be used to implement a broad
range of computational circuits at the nanoscale, with potential applications in high-precision …
range of computational circuits at the nanoscale, with potential applications in high-precision …