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Computational approaches to predict protein–protein interactions in crowded cellular environments
Investigating protein–protein interactions is crucial for understanding cellular biological
processes because proteins often function within molecular complexes rather than in …
processes because proteins often function within molecular complexes rather than in …
Macromolecular crowding is more than hard-core repulsions
Cells are crowded, but proteins are almost always studied in dilute aqueous buffer. We
review the experimental evidence that crowding affects the equilibrium thermodynamics of …
review the experimental evidence that crowding affects the equilibrium thermodynamics of …
Crowding in cellular environments at an atomistic level from computer simulations
The effects of crowding in biological environments on biomolecular structure, dynamics, and
function remain not well understood. Computer simulations of atomistic models of …
function remain not well understood. Computer simulations of atomistic models of …
Effects of proteins on protein diffusion
Despite increased attention, little is known about how the crowded intracellular environment
affects basic phenomena like protein diffusion. Here, we use NMR to quantify the rotational …
affects basic phenomena like protein diffusion. Here, we use NMR to quantify the rotational …
In-cell thermodynamics and a new role for protein surfaces
AE Smith, LZ Zhou, AH Gorensek, M Senske… - Proceedings of the …, 2016 - pnas.org
There is abundant, physiologically relevant knowledge about protein cores; they are
hydrophobic, exquisitely well packed, and nearly all hydrogen bonds are satisfied. An …
hydrophobic, exquisitely well packed, and nearly all hydrogen bonds are satisfied. An …
The molecular mechanism of nuclear transport revealed by atomic-scale measurements
Nuclear pore complexes (NPCs) form a selective filter that allows the rapid passage of
transport factors (TFs) and their cargoes across the nuclear envelope, while blocking the …
transport factors (TFs) and their cargoes across the nuclear envelope, while blocking the …
Protein 19F NMR in Escherichia coli
Although overexpression and 15N enrichment facilitate the observation of resonances from
disordered proteins in Escherichia coli, 15N enrichment alone is insufficient for detecting …
disordered proteins in Escherichia coli, 15N enrichment alone is insufficient for detecting …
The more the merrier: effects of macromolecular crowding on the structure and dynamics of biological membranes
M Löwe, M Kalacheva, AJ Boersma… - The FEBS …, 2020 - Wiley Online Library
Proteins are essential and abundant components of cellular membranes. Being densely
packed within the limited surface area, proteins fulfil essential tasks for life, which include …
packed within the limited surface area, proteins fulfil essential tasks for life, which include …
Slow-down in diffusion in crowded protein solutions correlates with transient cluster formation
For a long time, the effect of a crowded cellular environment on protein dynamics has been
largely ignored. Recent experiments indicate that proteins diffuse more slowly in a living cell …
largely ignored. Recent experiments indicate that proteins diffuse more slowly in a living cell …
Protein folding in the cell: challenges and progress
A Gershenson, LM Gierasch - Current opinion in structural biology, 2011 - Elsevier
It is hard to imagine a more extreme contrast than that between the dilute solutions used for
in vitro studies of protein folding and the crowded, compartmentalized, sticky, spatially …
in vitro studies of protein folding and the crowded, compartmentalized, sticky, spatially …