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Single-molecule visualization of twin-supercoiled domains generated during transcription
Transcription-coupled supercoiling of DNA is a key factor in chromosome compaction and
the regulation of genetic processes in all domains of life. It has become common knowledge …
the regulation of genetic processes in all domains of life. It has become common knowledge …
[HTML][HTML] CENP-B-mediated DNA loops regulate activity and stability of human centromeres
Chromosome inheritance depends on centromeres, epigenetically specified regions of
chromosomes. While conventional human centromeres are known to be built of long tandem …
chromosomes. While conventional human centromeres are known to be built of long tandem …
Relationship between the Chromosome Structural Dynamics and Gene Expression—A Chicken and Egg Dilemma?
Prokaryotic transcription was extensively studied over the last half-century. A great deal of
data has been accumulated regarding the control of gene expression by transcription factors …
data has been accumulated regarding the control of gene expression by transcription factors …
FIB-milled plasmonic nanoapertures allow for long trap** times of individual proteins
We have developed a fabrication methodology for label-free optical trap** of individual
nanobeads and proteins in inverted-bowtie-shaped plasmonic gold nanopores. Arrays of …
nanobeads and proteins in inverted-bowtie-shaped plasmonic gold nanopores. Arrays of …
Chromosomal position of ribosomal protein genes affects long-term evolution of Vibrio cholerae
It is unclear how gene order within the chromosome influences genome evolution. Bacteria
cluster transcription and translation genes close to the replication origin (oriC). In Vibrio …
cluster transcription and translation genes close to the replication origin (oriC). In Vibrio …
Xenogeneic nucleoid-associated EnrR thwarts H-NS silencing of bacterial virulence with unique DNA binding
R Ma, Y Liu, J Gan, H Qiao, J Ma, Y Zhang… - Nucleic Acids …, 2022 - academic.oup.com
Type III and type VI secretion systems (T3/T6SS) are encoded in horizontally acquired
genomic islands (GIs) that play crucial roles in evolution and virulence in bacterial …
genomic islands (GIs) that play crucial roles in evolution and virulence in bacterial …
[HTML][HTML] DNA as a Double-Coding Device for Information Conversion and Organization of a Self-Referential Unity
Living systems are capable on the one hand of eliciting a coordinated response to changing
environments (also known as adaptation), and on the other hand, they are capable of …
environments (also known as adaptation), and on the other hand, they are capable of …
[HTML][HTML] Extracting and characterizing protein-free megabase-pair DNA for in vitro experiments
M Holub, A Birnie, A Japaridze, J van der Torre… - Cell Reports …, 2022 - cell.com
Chromosome structure and function is studied using various cell-based methods as well as
with a range of in vitro single-molecule techniques on short DNA substrates. Here, we …
with a range of in vitro single-molecule techniques on short DNA substrates. Here, we …
Fluidification of entanglements by a DNA bending protein
In spite of the nanoscale and single-molecule insights into nucleoid associated proteins
(NAPs), their role in modulating the mesoscale viscoelasticity of entangled DNA has been …
(NAPs), their role in modulating the mesoscale viscoelasticity of entangled DNA has been …
[HTML][HTML] Towards a Better Control of Engineered Circuit Transcription in Bacterial Genomes
N Sarica, L Janniere, BC Jester - Applied Microbiology, 2025 - mdpi.com
The transcription of genes and engineered circuits can deeply vary when inserted into
different genomic loci. This unpredictable performance, termed context sensitivity …
different genomic loci. This unpredictable performance, termed context sensitivity …