[HTML][HTML] An overview of modern applications of negative binomial modelling in ecology and biodiversity

J Stoklosa, RV Blakey, FKC Hui - Diversity, 2022 - mdpi.com
Negative binomial modelling is one of the most commonly used statistical tools for analysing
count data in ecology and biodiversity research. This is not surprising given the prevalence …

Uncovering ecological state dynamics with hidden Markov models

BT McClintock, R Langrock, O Gimenez, E Cam… - Ecology …, 2020 - Wiley Online Library
Ecological systems can often be characterised by changes among a finite set of underlying
states pertaining to individuals, populations, communities or entire ecosystems through time …

[PDF][PDF] Two alternative evaluation metrics to replace the true skill statistic in the assessment of species distribution models

RF Wunderlich, YP Lin, J Anthony… - Nature …, 2019 - natureconservation.pensoft.net
Model evaluation metrics play a critical role in the selection of adequate species distribution
models for conservation and for any application of species distribution modelling (SDM) in …

Effects of human disturbances on wildlife behaviour and consequences for predator-prey overlap in Southeast Asia

SXT Lee, Z Amir, JH Moore, KM Gaynor… - Nature …, 2024 - nature.com
Some animal species shift their activity towards increased nocturnality in disturbed habitats
to avoid predominantly diurnal humans. This may alter diel overlap among species, a …

Using observation-level random effects to model overdispersion in count data in ecology and evolution

XA Harrison - PeerJ, 2014 - peerj.com
Overdispersion is common in models of count data in ecology and evolutionary biology, and
can occur due to missing covariates, non-independent (aggregated) data, or an excess …

A guide to Bayesian model selection for ecologists

MB Hooten, NT Hobbs - Ecological monographs, 2015 - Wiley Online Library
The steady upward trend in the use of model selection and Bayesian methods in ecological
research has made it clear that both approaches to inference are important for modern …

A comparison of observation-level random effect and Beta-Binomial models for modelling overdispersion in Binomial data in ecology & evolution

XA Harrison - PeerJ, 2015 - peerj.com
Overdispersion is a common feature of models of biological data, but researchers often fail
to model the excess variation driving the overdispersion, resulting in biased parameter …

A guide to the application of Hill numbers to DNA‐based diversity analyses

A Alberdi, MTP Gilbert - Molecular ecology resources, 2019 - Wiley Online Library
With the advent of DNA sequencing‐based techniques, the way we detect and measure
biodiversity is undergoing a radical shift. There is also an increasing awareness of the need …

Variation partitioning of species data matrices: estimation and comparison of fractions

PR Peres-Neto, P Legendre, S Dray, D Borcard - Ecology, 2006 - Wiley Online Library
Establishing relationships between species distributions and environmental characteristics
is a major goal in the search for forces driving species distributions. Canonical ordinations …

Generalized joint attribute modeling for biodiversity analysis: Median‐zero, multivariate, multifarious data

JS Clark, D Nemergut, B Seyednasrollah… - Ecological …, 2017 - Wiley Online Library
Probabilistic forecasts of species distribution and abundance require models that
accommodate the range of ecological data, including a joint distribution of multiple species …