Next-generation sequencing–based metagenomics has enabled to identify microorganisms
in characteristic habitats without the need for lengthy cultivation. Importantly, clinically …

Although long-read sequencing enables the generation of complete genomes for
unculturable microbes, its high cost limits the widespread adoption of long-read sequencing …

Metagenomics sequencing enables the direct study of microbial communities revealing
important information such as taxonomy and relative abundance of species. Metagenomics …

Motivation Metagenomic binning aims to retrieve microbial genomes directly from
ecosystems by clustering metagenomic contigs assembled from short reads into draft …

De novo assembly of metagenomic sequencing data plays an essential role in elucidating
the genomes of unculturable microbes. Linked-reads, in which short-reads are linked …

In recent decades, the rapid progress of DNA sequencing technologies has greatly
propelled metagenomics research. However, a critical bottleneck in current bioinformatics …

Despite the widespread adoption of k-mer-based methods in bioinformatics, understanding
the influence of k-mer sizes remains a persistent challenge. Selecting an optimal k-mer size …

The advent of advanced metagenome sequencing techniques has enabled the direct study
of microbial communities in their natural habitats, thereby facilitating the acquisition of …

The advent of metagenomic high-throughput chromosome conformation capture
(metagenomic Hi-C or metaHi-C) enables identifying contig-to-contig relationships with …

Metagenomics studies have provided key insights into the composition and structure of
microbial communities found in different environments. Among the techniques used to …