The human phenotype ontology in 2017

S Köhler, NA Vasilevsky, M Engelstad… - Nucleic acids …, 2017 - academic.oup.com
Deep phenoty** has been defined as the precise and comprehensive analysis of
phenotypic abnormalities in which the individual components of the phenotype are observed …

Automated clinical coding: what, why, and where we are?

H Dong, M Falis, W Whiteley, B Alex, J Matterson… - NPJ digital …, 2022 - nature.com
Clinical coding is the task of transforming medical information in a patient's health records
into structured codes so that they can be used for statistical analysis. This is a cognitive and …

Building a knowledge graph to enable precision medicine

P Chandak, K Huang, M Zitnik - Scientific Data, 2023 - nature.com
Develo** personalized diagnostic strategies and targeted treatments requires a deep
understanding of disease biology and the ability to dissect the relationship between …

[PDF][PDF] The human phenotype ontology in 2017

S Kohler, NA Vasilevsky, M Engelstad, E Foster… - 2017 - repository.ubn.ru.nl
Deep phenoty** has been defined as the precise and comprehensive analysis of
phenotypic abnormalities in which the individual components of the phenotype are observed …

International cooperation to enable the diagnosis of all rare genetic diseases

KM Boycott, A Rath, JX Chong, T Hartley… - The American Journal of …, 2017 - cell.com
Provision of a molecularly confirmed diagnosis in a timely manner for children and adults
with rare genetic diseases shortens their" diagnostic odyssey," improves disease …

A systematic overview of rare disease patient registries: challenges in design, quality management, and maintenance

IC Hageman, IALM van Rooij, I de Blaauw… - Orphanet Journal of …, 2023 - Springer
Patient registries serve to overcome the research limitations inherent in the study of rare
diseases, where patient numbers are typically small. Despite the value of real-world data …

DeepOnto: A Python package for ontology engineering with deep learning

Y He, J Chen, H Dong, I Horrocks, C Allocca… - Semantic …, 2024 - journals.sagepub.com
Integrating deep learning techniques, particularly language models (LMs), with knowledge
representation techniques like ontologies has raised widespread attention, urging the need …

AutoCore: A network-based definition of the core module of human autoimmunity and autoinflammation

J Guthrie, S Köstel Bal, SD Lombardo, F Müller… - Science …, 2023 - science.org
Although research on rare autoimmune and autoinflammatory diseases has enabled
definition of nonredundant regulators of homeostasis in human immunity, because of the …

[HTML][HTML] Adopting machine translation in the healthcare sector: A methodological multi-criteria review

M Zappatore, G Ruggieri - Computer Speech & Language, 2024 - Elsevier
Background: The recent advances in machine translation (MT) offer an appealing and low-
cost solution to overcome language barriers in multiple contexts (eg, travelling, cultural …

Machine learning-friendly biomedical datasets for equivalence and subsumption ontology matching

Y He, J Chen, H Dong, E Jiménez-Ruiz… - International Semantic …, 2022 - Springer
Ontology Matching (OM) plays an important role in many domains such as bioinformatics
and the Semantic Web, and its research is becoming increasingly popular, especially with …