Exact simulation of the Wright–Fisher diffusion

PA Jenkins, D Spano - 2017 - projecteuclid.org
Abstract The Wright–Fisher family of diffusion processes is a widely used class of
evolutionary models. However, simulation is difficult because there is no known closed-form …

Polygenic adaptation has impacted multiple anthropometric traits

JJ Berg, X Zhang, G Coop - biorxiv, 2017 - biorxiv.org
Our understanding of the genetic basis of human adaptation is biased toward loci of large
pheno-typic effect. Genome wide association studies (GWAS) now enable the study of …

Evolutionary rescue in a fluctuating environment: periodic versus quasi-periodic environmental changes

L Marrec, C Bank - Proceedings of the Royal Society B, 2023 - royalsocietypublishing.org
No environment is constant over time, and environmental fluctuations impact the outcome of
evolutionary dynamics. Survival of a population not adapted to some environmental …

The effects of weak selection on neutral diversity at linked sites

B Charlesworth - Genetics, 2022 - academic.oup.com
The effects of selection on variability at linked sites have an important influence on levels
and patterns of within-population variation across the genome. Most theoretical models of …

SSR Markers for Trichoderma virens: Their Evaluation and Application to Identify and Quantify Root-Endophytic Strains

J Geistlinger, J Zwanzig, S Heckendorff, I Schellenberg - Diversity, 2015 - mdpi.com
Using biological fertilizers and pesticides based on beneficial soil microbes in order to
reduce mineral fertilizers and chemical pesticides in conventional agriculture is still a matter …

Strong neutral sweeps occurring during a population contraction

A Moinet, F Schlichta, S Peischl, L Excoffier - Genetics, 2022 - academic.oup.com
A strong reduction in diversity around a specific locus is often interpreted as a recent rapid
fixation of a positively selected allele, a phenomenon called a selective sweep. Rapid …

Role of seasonal importation and genetic drift on selection for drug-resistant genotypes of Plasmodium falciparum in high-transmission settings

RJ Zupko, JL Servadio, TD Nguyen… - Journal of the …, 2024 - royalsocietypublishing.org
Historically Plasmodium falciparum has followed a pattern of drug resistance first appearing
in low-transmission settings before spreading to high-transmission settings. Several features …

Selective strolls: fixation and extinction in diploids are slower for weakly selected mutations than for neutral ones

F Mafessoni, M Lachmann - Genetics, 2015 - academic.oup.com
In finite populations, an allele disappears or reaches fixation due to two main forces,
selection and drift. Selection is generally thought to accelerate the process: a selected …

Genetic diversity and association analysis of ISSR markers with forage production traits in pigeonpea

GR da Silva, VA de Sousa, FL Guedes… - Genetic Resources and …, 2024 - Springer
Pigeonpea (Cajanus cajan) has gained worldwide attention among forage legumes due to
its important role in animal nutrition, as well as its resilience to drought and high …

Inference in population genetics using forward and backward, discrete and continuous time processes

J Bergman, D Schrempf, C Kosiol, C Vogl - Journal of Theoretical Biology, 2018 - Elsevier
A central aim of population genetics is the inference of the evolutionary history of a
population. To this end, the underlying process can be represented by a model of the …