Tissue macrophages: heterogeneity and functions

S Gordon, A Plüddemann - BMC biology, 2017 - Springer
Macrophages are present in all vertebrate tissues, from mid-gestation throughout life,
constituting a widely dispersed organ system. They promote homeostasis by responding to …

Computational and analytical challenges in single-cell transcriptomics

O Stegle, SA Teichmann, JC Marioni - Nature Reviews Genetics, 2015 - nature.com
The development of high-throughput RNA sequencing (RNA-seq) at the single-cell level has
already led to profound new discoveries in biology, ranging from the identification of novel …

Mouse Genome Informatics: an integrated knowledgebase system for the laboratory mouse

RM Baldarelli, CL Smith, M Ringwald, JE Richardson… - Genetics, 2024 - academic.oup.com
Abstract Mouse Genome Informatics (MGI) is a federation of expertly curated information
resources designed to support experimental and computational investigations into genetic …

[HTML][HTML] A single-cell time-lapse of mouse prenatal development from gastrula to birth

C Qiu, BK Martin, IC Welsh, RM Daza, TM Le, X Huang… - Nature, 2024 - nature.com
The house mouse (Mus musculus) is an exceptional model system, combining genetic
tractability with close evolutionary affinity to humans,. Mouse gestation lasts only 3 weeks …

Embryo-scale, single-cell spatial transcriptomics

SR Srivatsan, MC Regier, E Barkan, JM Franks… - Science, 2021 - science.org
Spatial patterns of gene expression manifest at scales ranging from local (eg, cell-cell
interactions) to global (eg, body axis patterning). However, current spatial transcriptomics …

Map** the mouse cell atlas by microwell-seq

X Han, R Wang, Y Zhou, L Fei, H Sun, S Lai… - Cell, 2018 - cell.com
Single-cell RNA sequencing (scRNA-seq) technologies are poised to reshape the current
cell-type classification system. However, a transcriptome-based single-cell atlas has not …

Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis

T Lohoff, S Ghazanfar, A Missarova, N Koulena… - Nature …, 2022 - nature.com
Molecular profiling of single cells has advanced our knowledge of the molecular basis of
development. However, current approaches mostly rely on dissociating cells from tissues …

Spatiotemporal structure of cell fate decisions in murine neural crest

R Soldatov, M Kaucka, ME Kastriti, J Petersen… - Science, 2019 - science.org
Neural crest cells are embryonic progenitors that generate numerous cell types in
vertebrates. With single-cell analysis, we show that mouse trunk neural crest cells become …

[HTML][HTML] A cellular and spatial map of the choroid plexus across brain ventricles and ages

N Dani, RH Herbst, C McCabe, GS Green, K Kaiser… - Cell, 2021 - cell.com
The choroid plexus (ChP) in each brain ventricle produces cerebrospinal fluid (CSF) and
forms the blood-CSF barrier. Here, we construct a single-cell and spatial atlas of each ChP …

The versatile gasdermin family: their function and roles in diseases

J Zou, Y Zheng, Y Huang, D Tang, R Kang… - Frontiers in …, 2021 - frontiersin.org
The gasdermin (GSDM) family, a novel group of structure-related proteins, consists of
GSDMA, GSDMB, GSDMC, GSDMD, GSDME/DNFA5, and PVJK/GSDMF. GSDMs possess …