Mitochondrial DNA under siege in avian phylogeography

RM Zink, GF Barrowclough - Molecular ecology, 2008 - Wiley Online Library
Mitochondrial DNA (mtDNA) has been the workhorse of research in phylogeography for
almost two decades. However, concerns with basing evolutionary interpretations on mtDNA …

DNA transfer from organelles to the nucleus: the idiosyncratic genetics of endosymbiosis

T Kleine, UG Maier, D Leister - Annual review of plant biology, 2009 - annualreviews.org
In eukaryotes, DNA is exchanged between endosymbiosis-derived compartments
(mitochondria and chloroplasts) and the nucleus. Organelle-to-nucleus DNA transfer …

Identification of birds through DNA barcodes

PDN Hebert, MY Stoeckle, TS Zemlak, CM Francis - PLoS biology, 2004 - journals.plos.org
Short DNA sequences from a standardized region of the genome provide a DNA barcode for
identifying species. Compiling a public library of DNA barcodes linked to named specimens …

Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

H Song, JE Buhay, MF Whiting, KA Crandall - Proceedings of the national …, 2008 - pnas.org
Nuclear mitochondrial pseudogenes (numts) are nonfunctional copies of mtDNA in the
nucleus that have been found in major clades of eukaryotic organisms. They can be easily …

Abundantly and Rarely Expressed Lhc Protein Genes Exhibit Distinct Regulation Patterns in Plants

F Klimmek, A Sjödin, C Noutsos, D Leister… - Plant …, 2006 - academic.oup.com
We have analyzed gene regulation of the Lhc supergene family in poplar (Populus spp.) and
Arabidopsis (Arabidopsis thaliana) using digital expression profiling. Multivariate analysis of …

[HTML][HTML] The ribosome as a missing link in the evolution of life

M Root-Bernstein, R Root-Bernstein - Journal of theoretical biology, 2015 - Elsevier
Many steps in the evolution of cellular life are still mysterious. We suggest that the ribosome
may represent one important missing link between compositional (or metabolism-first), RNA …

Origin, evolution and genetic effects of nuclear insertions of organelle DNA

D Leister - TRENDS in Genetics, 2005 - cell.com
In eukaryotes, nuclear genomes are subject to an influx of DNA from mitochondria and
plastids. The nuclear insertion of organellar sequences can occur during the illegitimate …

Phylogeography of **phorhynchus fuscus (Passeriformes, Dendrocolaptidae): vicariance and recent demographic expansion in southern Atlantic forest

GS Cabanne, FR Santos… - Biological Journal of the …, 2007 - academic.oup.com
Abstract Knowledge of the evolutionary processes that shaped a biota is important for both
academic and conservation purposes. The objective of the present study is to analyse the …

Recovery of the mitochondrial COI barcode region in diverse Hexapoda through tRNA-based primers

DS Park, SJ Suh, HW Oh, PDN Hebert - BMC genomics, 2010 - Springer
Background DNA barcoding uses a 650 bp segment of the mitochondrial cytochrome c
oxidase I (COI) gene as the basis for an identification system for members of the animal …

Exceptionally high density of NUMTs in the honeybee genome

P Pamilo, L Viljakainen… - Molecular biology and …, 2007 - academic.oup.com
The available genome sequences of 4 insects (the fruit fly, the African malaria mosquito, the
flour beetle, and the honeybee) are used to compare the amount of mitochondrial DNA …