Complex regulation in a Comamonas platform for diverse aromatic carbon metabolism

RA Wilkes, J Waldbauer, A Carroll… - Nature Chemical …, 2023 - nature.com
Critical to a sustainable energy future are microbial platforms that can process aromatic
carbons from the largely untapped reservoir of lignin and plastic feedstocks. Comamonas …

The design and engineering of synthetic genomes

JS James, J Dai, WL Chew, Y Cai - Nature Reviews Genetics, 2024 - nature.com
Synthetic genomics seeks to design and construct entire genomes to mechanistically dissect
fundamental questions of genome function and to engineer organisms for diverse …

Mechanisms of Polyethylene Terephthalate Pellet Fragmentation into Nanoplastics and Assimilable Carbons by Wastewater Comamonas

RA Wilkes, N Zhou, AL Carroll, O Aryal… - Environmental …, 2024 - ACS Publications
Comamonadaceae bacteria are enriched on poly (ethylene terephthalate)(PET)
microplastics in wastewaters and urban rivers, but the PET-degrading mechanisms remain …

Prolonging genetic circuit stability through adaptive evolution of overlap** genes

JL Chlebek, SP Leonard, C Kang-Yun… - Nucleic Acids …, 2023 - academic.oup.com
The development of synthetic biological circuits that maintain functionality over application-
relevant time scales remains a significant challenge. Here, we employed synthetic …

Recent advances, opportunities and challenges in cybergenetic identification and control of biomolecular networks

G Caringella, L Bandiera… - Current opinion in …, 2023 - research.ed.ac.uk
Cybergenetics is a new area of research aimed at develo** digital and biological
controllers for living systems. Synthetic biologists have begun exploiting cybergenetic tools …

[PDF][PDF] In silico design and automated learning to boost next-generation smart biomanufacturing

P Carbonell, R Le Feuvre, E Takano… - Synthetic …, 2020 - academic.oup.com
The increasing demand for bio-based compounds produced from waste or sustainable
sources is driving biofoundries to deliver a new generation of prototy** biomanufacturing …

Machine learning-aided scoring of synthesis difficulties for designer chromosomes

Y Zheng, K Song, ZX **e, MZ Han, F Guo… - Science China Life …, 2023 - Springer
Designer chromosomes are artificially synthesized chromosomes. Nowadays, these
chromosomes have numerous applications ranging from medical research to the …

Synthetic genomes unveil the effects of synonymous recoding

A Nyerges, A Chiappino-Pepe, B Budnik… - …, 2024 - pmc.ncbi.nlm.nih.gov
Engineering the genetic code of an organism provides the basis for (i) making any organism
safely resistant to natural viruses and (ii) preventing genetic information flow into and out of …

[HTML][HTML] A hybrid RNA-protein biosensor for high-throughput screening of adenosylcobalamin biosynthesis

X Yang, H Wang, D Ding, H Fang, H Dong… - Synthetic and Systems …, 2024 - Elsevier
Genetically encoded circuits have been successfully utilized to assess and characterize
target variants with desirable traits from large mutant libraries. Adenosylcobalamin is an …

Revolutionizing large-scale DNA synthesis with microchip-based massive in parallel synthesis system

X Zhang, X Jiang, Y Wang, Q Chen, R Zhang, H Jiang… - bioRxiv, 2024 - biorxiv.org
DNA synthesis serves as the fundamental enabling technology of engineering biology,
aiming to provide DNA molecules of designed composition, length, and complexity at scale …