A Comprehensive Review on Machine Learning Techniques for Protein Family Prediction

T Idhaya, A Suruliandi, SP Raja - The Protein Journal, 2024 - Springer
Proteomics is a field dedicated to the analysis of proteins in cells, tissues, and organisms,
aiming to gain insights into their structures, functions, and interactions. A crucial aspect …

Extreme learning machine model for water network management

AMA Sattar, ÖF Ertuğrul, B Gharabaghi… - Neural Computing and …, 2019 - Springer
A novel failure rate prediction model is developed by the extreme learning machine (ELM) to
provide key information needed for optimum ongoing maintenance/rehabilitation of a water …

Predicting protein-protein interactions via multivariate mutual information of protein sequences

Y Ding, J Tang, F Guo - BMC bioinformatics, 2016 - Springer
Abstract Background Protein-protein interactions (PPIs) are central to a lot of biological
processes. Many algorithms and methods have been developed to predict PPIs and protein …

ProtInteract: A deep learning framework for predicting protein–protein interactions

F Soleymani, E Paquet, HL Viktor… - Computational and …, 2023 - pmc.ncbi.nlm.nih.gov
Proteins mainly perform their functions by interacting with other proteins. Protein–protein
interactions underpin various biological activities such as metabolic cycles, signal …

Multilayer extreme learning machine with subnetwork nodes for representation learning

Y Yang, QMJ Wu - IEEE transactions on cybernetics, 2015 - ieeexplore.ieee.org
The extreme learning machine (ELM), which was originally proposed for “generalized”
single-hidden layer feedforward neural networks, provides efficient unified learning …

iPseU-CNN: identifying RNA pseudouridine sites using convolutional neural networks

M Tahir, H Tayara, KT Chong - Molecular Therapy Nucleic Acids, 2019 - cell.com
Pseudouridine is the most prevalent RNA modification and has been found in both
eukaryotes and prokaryotes. Currently, pseudouridine has been demonstrated in several …

Elliptic geometry-based kernel matrix for improved biological sequence classification

S Ali, M Shabbir, H Mansoor, P Chourasia… - Knowledge-Based …, 2024 - Elsevier
Protein sequence classification plays a pivotal role in bioinformatics as it enables the
comprehension of protein functions and their involvement in diverse biological processes …

A novel modeling in mathematical biology for classification of signal peptides

A Ehsan, K Mahmood, YD Khan, SA Khan, KC Chou - Scientific reports, 2018 - nature.com
The molecular structure of macromolecules in living cells is ambiguous unless we classify
them in a scientific manner. Signal peptides are of vital importance in determining the …

Landmark recognition with sparse representation classification and extreme learning machine

J Cao, Y Zhao, X Lai, MEH Ong, C Yin, ZX Koh… - Journal of the Franklin …, 2015 - Elsevier
Along with the rapid development of intelligent mobile terminals, applications on landmark
recognition attract increasingly attentions by world wide researchers in the past several …

Prediction of scour depth around bridge piers using self-adaptive extreme learning machine

I Ebtehaj, AMA Sattar, H Bonakdari… - Journal of …, 2017 - iwaponline.com
Accurate prediction of pier scour can lead to economic design of bridge piers and prevent
catastrophic incidents. This paper presents the application of self-adaptive evolutionary …