Drug design on quantum computers

R Santagati, A Aspuru-Guzik, R Babbush, M Degroote… - Nature Physics, 2024 - nature.com
The promised industrial applications of quantum computers often rest on their anticipated
ability to perform accurate, efficient quantum chemical calculations. Computational drug …

[HTML][HTML] Small-molecule agents for cancer immunotherapy

F Wang, K Fu, Y Wang, C Pan, X Wang, Z Liu… - … Pharmaceutica Sinica B, 2024 - Elsevier
Cancer immunotherapy, exemplified by the remarkable clinical benefits of the immune
checkpoint blockade and chimeric antigen receptor T-cell therapy, is revolutionizing cancer …

cGAS/STING signalling pathway in senescence and oncogenesis

L Yu, P Liu - Seminars in Cancer Biology, 2024 - Elsevier
The cGAS/STING signaling pathway is a crucial component of the innate immune system,
playing significant roles in sensing cytosolic DNA, regulating cellular senescence, and …

Performance and analysis of the alchemical transfer method for binding-free-energy predictions of diverse ligands

L Chen, Y Wu, C Wu, A Silveira… - Journal of Chemical …, 2023 - ACS Publications
The Alchemical Transfer Method (ATM) is herein validated against the relative binding-free
energies (RBFEs) of a diverse set of protein–ligand complexes. We employed a streamlined …

Design, synthesis, and biological evaluation of bipyridazine derivatives as stimulator of interferon genes (STING) receptor agonists

B Shan, H Hou, K Zhang, R Li, C Shen… - Journal of Medicinal …, 2023 - ACS Publications
The development of stimulator of interferon genes (STING) agonists has been of potential
applications for the treatment of cancer and infectious diseases. Based on the crystal …

Discovery of BI 7446: a potent cyclic dinucleotide STING agonist with broad-spectrum variant activity for the treatment of cancer

CA Kuttruff, M Fleck, S Carotta, H Arnhof… - Journal of Medicinal …, 2023 - ACS Publications
Activating the stimulator of interferon genes (STING) pathway with STING agonists is an
attractive immune oncology concept to treat patients with tumors that are refractory to single …

What to Make of Zero: Resolving the Statistical Noise from Conformational Reorganization in Alchemical Binding Free Energy Estimates with Metadynamics Sampling

S Khuttan, E Gallicchio - Journal of Chemical Theory and …, 2024 - ACS Publications
We introduce the self-relative binding free energy (self-RBFE) approach to evaluate the
intrinsic statistical variance of dual-topology alchemical binding free energy estimators. The …

The slow but steady rise of binding free energy calculations in drug discovery

H Xu - Journal of Computer-Aided Molecular Design, 2023 - Springer
Binding free energy calculations are increasingly used in drug discovery research to predict
protein-ligand binding affinities and to prioritize candidate drug molecules accordingly. It has …

Comprehensive Approach to Simulating Large Scale Conformational Changes in Biological Systems Utilizing a Path Collective Variable and New Barrier Restraint

I Kolossváry, W Sherman - The Journal of Physical Chemistry B, 2023 - ACS Publications
Conformational sampling of complex biomolecules is an emerging frontier in drug discovery.
Advances in lab-based structural biology and related computational approaches like …

Unraveling the Binding Mode of Cyclic Adenosine–Inosine Monophosphate (cAIMP) to STING through Molecular Dynamics Simulations

M Wang, B Fan, W Lu, U Ryde, Y Chang, D Han, J Lu… - Molecules, 2024 - mdpi.com
The stimulator of interferon genes (STING) plays a significant role in immune defense and
protection against tumor proliferation. Many cyclic dinucleotide (CDN) analogues have been …