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The pockets guide to HLA class I molecules
Human leukocyte antigens (HLA) are cell-surface proteins that present peptides to T cells.
These peptides are bound within the peptide binding cleft of HLA, and together as a …
These peptides are bound within the peptide binding cleft of HLA, and together as a …
A transformer-based model to predict peptide–HLA class I binding and optimize mutated peptides for vaccine design
Human leukocyte antigen (HLA) can recognize and bind foreign peptides to present them to
specialized immune cells, then initiate an immune response. Computational prediction of the …
specialized immune cells, then initiate an immune response. Computational prediction of the …
The immune epitope database 2.0
R Vita, L Zarebski, JA Greenbaum… - Nucleic acids …, 2010 - academic.oup.com
ABSTRACT The Immune Epitope Database (IEDB, www. iedb. org) provides a catalog of
experimentally characterized B and T cell epitopes, as well as data on Major …
experimentally characterized B and T cell epitopes, as well as data on Major …
Cancer immunoinformatics: A promising era in the development of peptide vaccines for human papillomavirus-induced cervical cancer
Cancer immunoinformatics have led to new directions towards vaccine design from
predicted potential epitope candidates, which are able to stimulate the correct cellular or …
predicted potential epitope candidates, which are able to stimulate the correct cellular or …
AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data
CP Toseland, DJ Clayton, H McSparron… - Immunome …, 2005 - Springer
AntiJen is a database system focused on the integration of kinetic, thermodynamic,
functional, and cellular data within the context of immunology and vaccinology. Compared to …
functional, and cellular data within the context of immunology and vaccinology. Compared to …
PepBank-a database of peptides based on sequence text mining and public peptide data sources
T Shtatland, D Guettler, M Kossodo, M Pivovarov… - BMC …, 2007 - Springer
Background Peptides are important molecules with diverse biological functions and
biomedical uses. To date, there does not exist a single, searchable archive for peptide …
biomedical uses. To date, there does not exist a single, searchable archive for peptide …
Modeling the structure of bound peptide ligands to major histocompatibility complex
In this article, we present a new technique for the rapid and precise docking of peptides to
MHC class I and class II receptors. Our docking procedure consists of three steps:(1) peptide …
MHC class I and class II receptors. Our docking procedure consists of three steps:(1) peptide …
Structural diversity of class I MHC-like molecules and its implications in binding specificities
The binding groove of class I major histocompatibility complex (MHC) class is essentially
important for antigen binding and presentation on T cells. There are several molecules that …
important for antigen binding and presentation on T cells. There are several molecules that …
Predicting MHC class I binder: existing approaches and a novel recurrent neural network solution
Major histocompatibility complex (MHC) possesses important research value in the
treatment of complex human diseases. A plethora of computational tools has been …
treatment of complex human diseases. A plethora of computational tools has been …
Virus-epitope vaccine design: informatic matching the HLA-I polymorphism to the virus genome
T Vider-Shalit, S Raffaeli, Y Louzoun - Molecular immunology, 2007 - Elsevier
Attempts to develop peptide vaccines, based on a limited number of peptides face two
problems: HLA polymorphism and the high mutation rate of viral epitopes. We have …
problems: HLA polymorphism and the high mutation rate of viral epitopes. We have …