The pockets guide to HLA class I molecules

AT Nguyen, C Szeto, S Gras - Biochemical Society Transactions, 2021 - portlandpress.com
Human leukocyte antigens (HLA) are cell-surface proteins that present peptides to T cells.
These peptides are bound within the peptide binding cleft of HLA, and together as a …

A transformer-based model to predict peptide–HLA class I binding and optimize mutated peptides for vaccine design

Y Chu, Y Zhang, Q Wang, L Zhang, X Wang… - Nature Machine …, 2022 - nature.com
Human leukocyte antigen (HLA) can recognize and bind foreign peptides to present them to
specialized immune cells, then initiate an immune response. Computational prediction of the …

The immune epitope database 2.0

R Vita, L Zarebski, JA Greenbaum… - Nucleic acids …, 2010 - academic.oup.com
ABSTRACT The Immune Epitope Database (IEDB, www. iedb. org) provides a catalog of
experimentally characterized B and T cell epitopes, as well as data on Major …

Cancer immunoinformatics: A promising era in the development of peptide vaccines for human papillomavirus-induced cervical cancer

S Kaliamurthi, G Selvaraj, M Junaid… - Current …, 2018 - benthamdirect.com
Cancer immunoinformatics have led to new directions towards vaccine design from
predicted potential epitope candidates, which are able to stimulate the correct cellular or …

AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data

CP Toseland, DJ Clayton, H McSparron… - Immunome …, 2005 - Springer
AntiJen is a database system focused on the integration of kinetic, thermodynamic,
functional, and cellular data within the context of immunology and vaccinology. Compared to …

PepBank-a database of peptides based on sequence text mining and public peptide data sources

T Shtatland, D Guettler, M Kossodo, M Pivovarov… - BMC …, 2007 - Springer
Background Peptides are important molecules with diverse biological functions and
biomedical uses. To date, there does not exist a single, searchable archive for peptide …

Modeling the structure of bound peptide ligands to major histocompatibility complex

JC Tong, TW Tan, S Ranganathan - Protein Science, 2004 - Wiley Online Library
In this article, we present a new technique for the rapid and precise docking of peptides to
MHC class I and class II receptors. Our docking procedure consists of three steps:(1) peptide …

Structural diversity of class I MHC-like molecules and its implications in binding specificities

MDI Hassan, F Ahmad - Advances in protein chemistry and structural …, 2011 - Elsevier
The binding groove of class I major histocompatibility complex (MHC) class is essentially
important for antigen binding and presentation on T cells. There are several molecules that …

Predicting MHC class I binder: existing approaches and a novel recurrent neural network solution

L Jiang, H Yu, J Li, J Tang, Y Guo… - Briefings in …, 2021 - academic.oup.com
Major histocompatibility complex (MHC) possesses important research value in the
treatment of complex human diseases. A plethora of computational tools has been …

Virus-epitope vaccine design: informatic matching the HLA-I polymorphism to the virus genome

T Vider-Shalit, S Raffaeli, Y Louzoun - Molecular immunology, 2007 - Elsevier
Attempts to develop peptide vaccines, based on a limited number of peptides face two
problems: HLA polymorphism and the high mutation rate of viral epitopes. We have …