The dynamism of transposon methylation for plant development and stress adaptation
Plant development processes are regulated by epigenetic alterations that shape nuclear
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …
structure, gene expression, and phenotypic plasticity; these alterations can provide the plant …
Three-dimensional chromatin packing and positioning of plant genomes
ES Doğan, C Liu - Nature plants, 2018 - nature.com
Abstract Information and function of a genome are not only decorated with epigenetic marks
in the linear DNA sequence but also in their non-random spatial organization in the nucleus …
in the linear DNA sequence but also in their non-random spatial organization in the nucleus …
[HTML][HTML] Chromatin organization in early land plants reveals an ancestral association between H3K27me3, transposons, and constitutive heterochromatin
Genome packaging by nucleosomes is a hallmark of eukaryotes. Histones and the pathways
that deposit, remove, and read histone modifications are deeply conserved. Yet, we lack …
that deposit, remove, and read histone modifications are deeply conserved. Yet, we lack …
Altered chromatin architecture and gene expression during polyploidization and domestication of soybean
L Wang, G Jia, X Jiang, S Cao, ZJ Chen… - The Plant Cell, 2021 - academic.oup.com
Polyploidy or whole-genome duplication (WGD) is widespread in plants and is a key driver
of evolution and speciation, accompanied by rapid and dynamic changes in genomic …
of evolution and speciation, accompanied by rapid and dynamic changes in genomic …
Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation
Insight into high-resolution three-dimensional genome organization and its effect on
transcription remains largely elusive in plants. Here, using a long-read ChIA-PET approach …
transcription remains largely elusive in plants. Here, using a long-read ChIA-PET approach …
Role of chromatin architecture in plant stress responses: an update
Sessile plants possess an assembly of signaling pathways that perceive and transmit
environmental signals, ultimately resulting in transcriptional reprogramming. Histone is a key …
environmental signals, ultimately resulting in transcriptional reprogramming. Histone is a key …
Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes
A comprehensive analysis of relative gene order, or microsynteny, can provide valuable
information for understanding the evolutionary history of genes and genomes, and ultimately …
information for understanding the evolutionary history of genes and genomes, and ultimately …
Charting the genomic landscape of seed-free plants
During the past few years several high-quality genomes has been published from
Charophyte algae, bryophytes, lycophytes and ferns. These genomes have not only …
Charophyte algae, bryophytes, lycophytes and ferns. These genomes have not only …
Understanding 3D genome organization and its effect on transcriptional gene regulation under environmental stress in plant: a chromatin perspective
The genome of a eukaryotic organism is comprised of a supra-molecular complex of
chromatin fibers and intricately folded three-dimensional (3D) structures. Chromosomal …
chromatin fibers and intricately folded three-dimensional (3D) structures. Chromosomal …
Biased gene retention during diploidization in Brassica linked to three-dimensional genome organization
T **e, FG Zhang, HY Zhang, XT Wang, JH Hu, XM Wu - Nature plants, 2019 - nature.com
The non-random three-dimensional (3D) organization of the genome in the nucleus is
critical to gene regulation and genome function. Using high-throughput chromatin …
critical to gene regulation and genome function. Using high-throughput chromatin …