[HTML][HTML] Homoeologs: what are they and how do we infer them?

NM Glover, H Redestig, C Dessimoz - Trends in plant science, 2016‏ - cell.com
The evolutionary history of nearly all flowering plants includes a polyploidization event.
Homologous genes resulting from allopolyploidy are commonly referred to as 'homoeologs' …

Genome‐wide analysis of MIKC‐type MADS‐box genes in wheat: pervasive duplications, functional conservation and putative neofunctionalization

S Schilling, A Kennedy, S Pan, LS Jermiin… - New …, 2020‏ - Wiley Online Library
Wheat (Triticum aestivum) is one of the most important crops worldwide. Given a growing
global population coupled with increasingly challenging cultivation conditions, facilitating …

High throughput SNP discovery and genoty** in hexaploid wheat

H Rimbert, B Darrier, J Navarro, J Kitt, F Choulet… - PloS one, 2018‏ - journals.plos.org
Because of their abundance and their amenability to high-throughput genoty**
techniques, Single Nucleotide Polymorphisms (SNPs) are powerful tools for efficient …

Identification and validation of a major and stably expressed QTL for spikelet number per spike in bread wheat

J Ma, P Ding, J Liu, T Li, Y Zou, A Habib, Y Mu… - Theoretical and Applied …, 2019‏ - Springer
Key message A major and stably expressed QTL for spikelet number per spike identified in a
2-cM interval on chromosome arm 2DS was validated using two populations with different …

Further studies on sugar transporter (SWEET) genes in wheat (Triticum aestivum L.)

T Gautam, G Saripalli, V Gahlaut, A Kumar… - Molecular Biology …, 2019‏ - Springer
SWEET proteins represent one of the largest sugar transporter family in the plant kingdom
and play crucial roles in plant development and stress responses. In the present study, a …

Genome-wide analysis of WRKY transcription factors in wheat (Triticum aestivum L.) and differential expression under water deficit condition

P Ning, C Liu, J Kang, J Lv - PeerJ, 2017‏ - peerj.com
Background WRKY proteins, which comprise one of the largest transcription factor (TF)
families in the plant kingdom, play crucial roles in plant development and stress responses …

Contribution of duplicated Nucleotide-binding Leucine-Rich Repeat (NLR) genes to wheat disease resistance

Y Hao, Y Pan, W Chen, MAR Rashid, M Li, N Che… - Plants, 2023‏ - mdpi.com
Wheat has a large and diverse repertoire of NLRs involved in disease resistance, with over
1500 NLRs detected in some studies. These NLR genes occur as singletons or clusters …

Comparative Analysis of the Glutathione S‐Transferase Gene Family of Four Triticeae Species and Transcriptome Analysis of GST Genes in Common Wheat …

Y Hao, S Xu, Z Lyu, H Wang, L Kong… - International journal of …, 2021‏ - Wiley Online Library
Glutathione S‐transferases (GSTs) are ancient proteins encoded by a large gene family in
plants, which play multiple roles in plant growth and development. However, there has been …

Genome-wide analysis, expansion and expression of the NAC family under drought and heat stresses in bread wheat (T. aestivum L.)

C Guerin, J Roche, V Allard, C Ravel, S Mouzeyar… - PLoS …, 2019‏ - journals.plos.org
The NAC family is one of the largest plant-specific transcription factor families, and some of
its members are known to play major roles in plant development and response to biotic and …

Gene duplication and evolution dynamics in the homeologous regions harboring multiple prolamin and resistance gene families in hexaploid wheat

N Huo, S Zhang, T Zhu, L Dong, Y Wang… - Frontiers in plant …, 2018‏ - frontiersin.org
Improving end-use quality and disease resistance are important goals in wheat breeding.
The genetic loci controlling these traits are highly complex, consisting of large families of …