Identification of RNA structures and their roles in RNA functions

X Cao, Y Zhang, Y Ding, Y Wan - Nature Reviews Molecular Cell …, 2024 - nature.com
The development of high-throughput RNA structure profiling methods in the past decade has
greatly facilitated our ability to map and characterize different aspects of RNA structures …

[BOK][B] Genomes 5

TA Brown - 2023 - taylorfrancis.com
Genomes 5 has been completely revised and updated. It is a thoroughly modern textbook
about genomes and how they are investigated. As with previous Genomes editions …

Complementary Alu sequences mediate enhancer–promoter selectivity

L Liang, C Cao, L Ji, Z Cai, D Wang, R Ye, J Chen… - Nature, 2023 - nature.com
Enhancers determine spatiotemporal gene expression programs by engaging with long-
range promoters,,–. However, it remains unknown how enhancers find their cognate …

SARS-CoV-2 RNA stabilizes host mRNAs to elicit immunopathogenesis

H Zhao, Z Cai, J Rao, D Wu, L Ji, R Ye, D Wang… - Molecular cell, 2024 - cell.com
SARS-CoV-2 RNA interacts with host factors to suppress interferon responses and
simultaneously induces cytokine release to drive the development of severe coronavirus …

Global identification of mRNA-interacting circular RNAs by CLiPPR-Seq

S Singh, S Shyamal, A Das, AC Panda - Nucleic acids research, 2024 - academic.oup.com
Although the functional role of circular RNA (circRNA) interaction with microRNAs and
proteins has been studied extensively, circRNA interactions with the protein-coding mRNAs …

Detecting RNA–RNA interactome

S Singh, S Shyamal, AC Panda - Wiley Interdisciplinary …, 2022 - Wiley Online Library
The last decade has seen a robust increase in various types of novel RNA molecules and
their complexity in gene regulation. RNA molecules play a critical role in cellular events by …

From molecular basics to agronomic benefits: Insights into noncoding RNA‐mediated gene regulation in plants

Y Wang, XW Deng, D Zhu - Journal of Integrative Plant Biology, 2022 - Wiley Online Library
The development of plants is largely dependent on their growth environment. To better
adapt to a particular habitat, plants have evolved various subtle regulatory mechanisms for …

Recent advances in RNA structurome

B Xu, Y Zhu, C Cao, H Chen, Q **, G Li, J Ma… - Science China Life …, 2022 - Springer
RNA structures are essential to support RNA functions and regulation in various biological
processes. Recently, a range of novel technologies have been developed to decode …

RNA in situ conformation sequencing reveals novel long-range RNA structures with impact on splicing

S Margasyuk, M Kalinina, M Petrova, D Skvortsov… - RNA, 2023 - rnajournal.cshlp.org
Over recent years, long-range RNA structure has emerged as a factor that is fundamental to
alternative splicing regulation. An increasing number of human disorders are now being …

A novel super-enhancer-related risk model for predicting prognosis and guiding personalized treatment in hepatocellular carcinoma

Q Wu, P Li, X Tao, N Lin, BB Mao, X **e - BMC cancer, 2024 - Springer
Background Our research endeavored to develop a robust predictive signature grounded in
super-enhancer-related genes (SERGs), with the dual objectives of forecasting survival …