Stochastic thermodynamics, fluctuation theorems and molecular machines

U Seifert - Reports on progress in physics, 2012 - iopscience.iop.org
Stochastic thermodynamics as reviewed here systematically provides a framework for
extending the notions of classical thermodynamics such as work, heat and entropy …

The dynamic synapse

D Choquet, A Triller - Neuron, 2013 - cell.com
The constant dynamic movement of synapses and their components has emerged in the last
decades as a key feature of synaptic transmission and its plasticity. Intramolecular protein …

Fluctuation–dissipation: response theory in statistical physics

UMB Marconi, A Puglisi, L Rondoni, A Vulpiani - Physics reports, 2008 - Elsevier
General aspects of the Fluctuation–Dissipation Relation (FDR), and Response Theory are
considered. After analyzing the conceptual and historical relevance of fluctuations in …

Broken detailed balance and non-equilibrium dynamics in living systems: a review

FS Gnesotto, F Mura, J Gladrow… - Reports on Progress in …, 2018 - iopscience.iop.org
Living systems operate far from thermodynamic equilibrium. Enzymatic activity can induce
broken detailed balance at the molecular scale. This molecular scale breaking of detailed …

Optical tweezers—from calibration to applications: a tutorial

J Gieseler, JR Gomez-Solano, A Magazzù… - Advances in Optics …, 2021 - opg.optica.org
Since their invention in 1986 by Arthur Ashkin and colleagues, optical tweezers have
become an essential tool in several fields of physics, spectroscopy, biology …

Single-molecule experiments in biological physics: methods and applications

F Ritort - Journal of Physics: Condensed Matter, 2006 - iopscience.iop.org
I review single-molecule experiments (SMEs) in biological physics. Recent technological
developments have provided the tools to design and build scientific instruments of high …

Variance sum rule for entropy production

I Di Terlizzi, M Gironella, D Herráez-Aguilar, T Betz… - Science, 2024 - science.org
Entropy production is the hallmark of nonequilibrium physics, quantifying irreversibility,
dissipation, and the efficiency of energy transduction processes. Despite many efforts, its …

Temperature in and out of equilibrium: A review of concepts, tools and attempts

A Puglisi, A Sarracino, A Vulpiani - Physics Reports, 2017 - Elsevier
We review the general aspects of the concept of temperature in equilibrium and non-
equilibrium statistical mechanics. Although temperature is an old and well-established …

First and second law of thermodynamics at strong coupling

U Seifert - Physical review letters, 2016 - APS
For a small driven system coupled strongly to a heat bath, internal energy and exchanged
heat are identified such that they obey the usual additive form of the first law. By identifying …

Uncertainty relations in stochastic processes: An information inequality approach

Y Hasegawa, T Van Vu - Physical Review E, 2019 - APS
The thermodynamic uncertainty relation is an inequality stating that it is impossible to attain
higher precision than the bound defined by entropy production. In statistical inference …