Environmental DNA metabarcoding: Transforming how we survey animal and plant communities

K Deiner, HM Bik, E Mächler, M Seymour… - Molecular …, 2017 - Wiley Online Library
The genomic revolution has fundamentally changed how we survey biodiversity on earth.
High‐throughput sequencing (“HTS”) platforms now enable the rapid sequencing of DNA …

Environmental DNA time series in ecology

M Balint, M Pfenninger, HP Grossart, P Taberlet… - Trends in Ecology & …, 2018 - cell.com
Ecological communities change in time and space, but long-term dynamics at the century-to-
millennia scale are poorly documented due to lack of relevant data sets. Nevertheless …

Neandertal and Denisovan DNA from Pleistocene sediments

V Slon, C Hopfe, CL Weiß, F Mafessoni… - Science, 2017 - science.org
Although a rich record of Pleistocene human-associated archaeological assemblages
exists, the scarcity of hominin fossils often impedes the understanding of which hominins …

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

SST Mak, S Gopalakrishnan, C Carøe, C Geng… - …, 2017 - academic.oup.com
Ancient DNA research has been revolutionized following development of next-generation
sequencing platforms. Although a number of such platforms have been applied to ancient …

From benchtop to desktop: important considerations when designing amplicon sequencing workflows

DC Murray, ML Coghlan, M Bunce - PloS one, 2015 - journals.plos.org
Amplicon sequencing has been the method of choice in many high-throughput DNA
sequencing (HTS) applications. To date there has been a heavy focus on the means by …

Testing multiple substrates for terrestrial biodiversity monitoring using environmental DNA metabarcoding

M Van Der Heyde, M Bunce… - Molecular Ecology …, 2020 - Wiley Online Library
Biological surveys based on visual identification of the biota are challenging, expensive and
time consuming, yet crucial for effective biomonitoring. DNA metabarcoding is a rapidly …

[HTML][HTML] Environmental DNA and metabarcoding for the study of amphibians and reptiles: species distribution, the microbiome, and much more

GF Ficetola, R Manenti, P Taberlet - Amphibia-Reptilia, 2019 - brill.com
In the last decade, eDNA and metabarcoding have opened new avenues to biodiversity
studies; amphibians and reptiles are animals for which these new approaches have allowed …

Use of ancient sedimentary DNA as a novel conservation tool for high‐altitude tropical biodiversity

S Boessenkool, G Mcglynn, LS Epp… - Conservation …, 2014 - Wiley Online Library
Conservation of biodiversity may in the future increasingly depend upon the availability of
scientific information to set suitable restoration targets. In traditional paleoecology, sediment …

Ancient plant genomics in archaeology, herbaria, and the environment

L Kistler, VC Bieker, MD Martin… - Annual review of …, 2020 - annualreviews.org
The ancient DNA revolution of the past 35 years has driven an explosion in the breadth,
nuance, and diversity of questions that are approachable using ancient biomolecules, and …