Promoter-proximal pausing of RNA polymerase II: a nexus of gene regulation

L Core, K Adelman - Genes & development, 2019 - genesdev.cshlp.org
Precise spatio–temporal control of gene activity is essential for organismal development,
growth, and survival in a changing environment. Decisive steps in gene regulation involve …

Transcriptional elongation control in developmental gene expression, aging, and disease

Y Aoi, A Shilatifard - Molecular cell, 2023 - cell.com
The elongation stage of transcription by RNA polymerase II (RNA Pol II) is central to the
regulation of gene expression in response to developmental and environmental cues in …

NELF regulates a promoter-proximal step distinct from RNA Pol II pause-release

Y Aoi, ER Smith, AP Shah, EJ Rendleman, SA Marshall… - Molecular cell, 2020 - cell.com
Summary RNA polymerase II (RNA Pol II) is generally paused at promoter-proximal regions
in most metazoans, and based on in vitro studies, this function has been attributed to the …

Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis

X Zhang, HC Chiang, Y Wang, C Zhang, S Smith… - Nature …, 2017 - nature.com
Most BRCA1-associated breast tumours are basal-like yet originate from luminal
progenitors. BRCA1 is best known for its functions in double-strand break repair and …

Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation

S Nechaev, K Adelman - Biochimica et Biophysica Acta (BBA)-Gene …, 2011 - Elsevier
Proper regulation of gene expression is essential for the differentiation, development and
survival of all cells and organisms. Recent work demonstrates that transcription of many …

Pausing of RNA polymerase II regulates mammalian developmental potential through control of signaling networks

LH Williams, G Fromm, NG Gokey, T Henriques… - Molecular cell, 2015 - cell.com
The remarkable capacity for pluripotency and self-renewal in embryonic stem cells (ESCs)
requires a finely tuned transcriptional circuitry wherein the pathways and genes that initiate …

Ready, pause, go: regulation of RNA polymerase II pausing and release by cellular signaling pathways

X Liu, WL Kraus, X Bai - Trends in biochemical sciences, 2015 - cell.com
Promoter-proximal pausing by RNA polymerase II (Pol II) is a well-established mechanism to
control the timing, rate, and possibly the magnitude of transcriptional responses. Recent …

Rapid and efficient degradation of endogenous proteins in vivo identifies stage-specific roles of RNA Pol II pausing in mammalian development

A Abuhashem, AS Lee, AL Joyner, AK Hadjantonakis - Developmental cell, 2022 - cell.com
Targeted protein degradation methods offer a unique avenue to assess a protein's function
in a variety of model systems. Recently, these approaches have been applied to mammalian …

Transcription elongation factors DSIF and NELF: promoter-proximal pausing and beyond

Y Yamaguchi, H Shibata, H Handa - Biochimica Et Biophysica Acta (BBA) …, 2013 - Elsevier
DRB sensitivity-inducing factor (DSIF) and negative elongation factor (NELF) were originally
identified as factors responsible for transcriptional inhibition by 5, 6-dichloro-1-beta-d …

RNA polymerase II pausing in development: orchestrating transcription

A Abuhashem, V Garg… - Open Biology, 2022 - royalsocietypublishing.org
The coordinated regulation of transcriptional networks underpins cellular identity and
developmental progression. RNA polymerase II promoter-proximal pausing (Pol II pausing) …