Long-read sequencing has recently transformed metagenomics, enhancing strain-level
pathogen characterization, enabling accurate and complete metagenome-assembled …

The study of microbial communities has undergone significant advancements, starting from
the initial use of 16S rRNA sequencing to the adoption of shotgun metagenomics. However …

Motivation Metagenomic binning methods to reconstruct metagenome-assembled genomes
(MAGs) from environmental samples have been widely used in large-scale metagenomic …

The oral microbiota has an enormous impact on human health, with oral dysbiosis now
linked to many oral and systemic diseases. Recent advancements in sequencing, mass …

Viral infections modulate bacterial metabolism and ecology. Here, we investigated the
hypothesis that viruses influence the ecology of purple and green sulfur bacteria in anoxic …

Metagenomics enables the recovery of various genetic materials from different species, thus
providing valuable insights into microbial communities. Metagenomic binning group …

Epidemics and pandemics have occurred since the beginning of time, resulting in millions of
deaths. Many such disease outbreaks are caused by viruses. Some viruses, particularly …

The recent acceleration in genome sequencing targeting previously unexplored parts of the
tree of life presents computational challenges. Samples collected from the wild often contain …

Metagenomic sequencing analysis is central to investigating microbial communities in
clinical and environmental studies. Short-read sequencing remains the primary approach for …

Metagenomics involves the study of genetic material obtained directly from communities of
microorganisms living in natural environments. The field of metagenomics has provided …