Next-generation sequencing technology: current trends and advancements

H Satam, K Joshi, U Mangrolia, S Waghoo, G Zaidi… - Biology, 2023 - mdpi.com
Simple Summary Next-generation sequencing (NGS) is a powerful tool used in genomics
research. NGS can sequence millions of DNA fragments at once, providing detailed …

Risk control of antibiotics, antibiotic resistance genes (ARGs) and antibiotic resistant bacteria (ARB) during sewage sludge treatment and disposal: A review

J Wang, S Xu, K Zhao, G Song, S Zhao, R Liu - Science of The Total …, 2023 - Elsevier
Sewage sludge is an important reservoir of antibiotics, antibiotic resistance genes (ARGs),
and antibiotic resistant bacteria (ARB) in wastewater treatment plants (WWTPs), and the …

Current challenges and best-practice protocols for microbiome analysis

R Bharti, DG Grimm - Briefings in bioinformatics, 2021 - academic.oup.com
Analyzing the microbiome of diverse species and environments using next-generation
sequencing techniques has significantly enhanced our understanding on metabolic …

Opportunities and challenges of using metagenomic data to bring uncultured microbes into cultivation

S Liu, CD Moon, N Zheng, S Huws, S Zhao, J Wang - Microbiome, 2022 - Springer
Although there is now an extensive understanding of the diversity of microbial life on earth
through culture-independent metagenomic DNA sequence analyses, the isolation and …

Enhancing diversity analysis by repeatedly rarefying next generation sequencing data describing microbial communities

ES Cameron, PJ Schmidt, BJM Tremblay, MB Emelko… - Scientific reports, 2021 - nature.com
Amplicon sequencing has revolutionized our ability to study DNA collected from
environmental samples by providing a rapid and sensitive technique for microbial …

[ΒΙΒΛΙΟ][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …

Harnessing root exudates for plant microbiome engineering and stress resistance in plants

MS Afridi, A Kumar, MA Javed, A Dubey… - Microbiological …, 2024 - Elsevier
A wide range of abiotic and biotic stresses adversely affect plant's growth and production.
Under stress, one of the main responses of plants is the modulation of exudates excreted in …

[HTML][HTML] The life of soils: Integrating the who and how of multifunctionality

RE Creamer, JM Barel, G Bongiorno… - Soil Biology and …, 2022 - Elsevier
Capturing the complexity of soil life for soil quality assessments is one of the most
challenging paradoxes of contemporary soil science. Soil biota perform a plethora of …

Critical assessment of metagenome interpretation—a benchmark of metagenomics software

A Sczyrba, P Hofmann, P Belmann, D Koslicki… - Nature …, 2017 - nature.com
Methods for assembly, taxonomic profiling and binning are key to interpreting metagenome
data, but a lack of consensus about benchmarking complicates performance assessment …

Antibiotic resistance in wastewater treatment plants: Tackling the black box

CM Manaia, J Rocha, N Scaccia, R Marano… - Environment …, 2018 - Elsevier
Wastewater is among the most important reservoirs of antibiotic resistance in urban
environments. The abundance of carbon sources and other nutrients, a variety of possible …