[HTML][HTML] Exploring the transcriptional landscape of phage–host interactions using novel high-throughput approaches

L Putzeys, L Wicke, A Brandão, M Boon… - Current Opinion in …, 2024 - Elsevier
In the last decade, powerful high-throughput sequencing approaches have emerged to
analyse microbial transcriptomes at a global scale. However, to date, applications of these …

The MetaInvert soil invertebrate genome resource provides insights into below-ground biodiversity and evolution

G Collins, C Schneider, LL Boštjančić… - Communications …, 2023 - nature.com
Soil invertebrates are among the least understood metazoans on Earth. Thus far, the lack of
taxonomically broad and dense genomic resources has made it hard to thoroughly …

ViraLM: empowering virus discovery through the genome foundation model

C Peng, J Shang, J Guan, D Wang, Y Sun - Bioinformatics, 2024 - academic.oup.com
Motivation Viruses, with their ubiquitous presence and high diversity, play pivotal roles in
ecological systems and public health. Accurate identification of viruses in various …

Research progress and application of bacterial traceability technology

W Wang, B Zhao, H Zhang, Z Jie, C Hu, H Guo… - Forensic Science …, 2024 - Elsevier
Bacterial traceability refers to the use of a range of techniques to trace the origins and
transmission pathways of bacteria. It is crucial in controlling the spread of diseases …

Gene abundance linked to climate zone: Parallel evolution of gene content along elevation gradients in lichenized fungi

D Merges, F Dal Grande, H Valim, G Singh… - Frontiers in …, 2023 - frontiersin.org
Introduction Intraspecific genomic variability affects a species' adaptive potential toward
climatic conditions. Variation in gene content across populations and environments may …

Insights into ecological & evolutionary processes via community metabarcoding

R Gillespie, H Bik, M Hickerson, H Krehenwinkel… - Authorea …, 2023 - authorea.com
The Special Issue brought together papers that highlighted the power of high-throughput
sequencing (HTS) data to address classic questions in ecology and evolution, and/or use …

Global diversity of putative functional viral auxiliary metabolic genes and their relationship with soil organic carbon stocks

D Merges - bioRxiv, 2024 - biorxiv.org
Global biodiversity decline has prompted extensive research and debate on how
biodiversity loss affects ecosystem functioning. Microbial taxonomic and functional diversity …

Brass tacks of 'Omics' technologies for decoding soil microbiome

R Singla, H Goel - Soil Microbiome of the Cold Habitats, 2023 - taylorfrancis.com
Soil is a unique biological system with an abundant microflora that has very high microbial
diversity, capable of performing multiple key ecosystem functions. The detection of genes in …