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[PDF][PDF] Current status of genomic evaluation
Early application of genomic selection relied on SNP estimation with phenotypes or de-
regressed proofs (DRP). Chips of 50k SNP seemed sufficient for an accurate estimation of …
regressed proofs (DRP). Chips of 50k SNP seemed sufficient for an accurate estimation of …
[HTML][HTML] Single-step genomic evaluations from theory to practice: using SNP chips and sequence data in BLUPF90
Single-step genomic evaluation became a standard procedure in livestock breeding, and
the main reason is the ability to combine all pedigree, phenotypes, and genotypes available …
the main reason is the ability to combine all pedigree, phenotypes, and genotypes available …
Bias and accuracy of dairy sheep evaluations using BLUP and SSGBLUP with metafounders and unknown parent groups
FL Macedo, OF Christensen, JM Astruc… - Genetics Selection …, 2020 - Springer
Background Bias has been reported in genetic or genomic evaluations of several species.
Common biases are systematic differences between averages of estimated and true …
Common biases are systematic differences between averages of estimated and true …
[HTML][HTML] Symposium review: Single-step genomic evaluations in dairy cattle
During the last decade, genomic selection has revolutionized dairy cattle breeding. For
example, Nordic dairy cows (Denmark, Finland, and Sweden) born in 2018 were> 90% sired …
example, Nordic dairy cows (Denmark, Finland, and Sweden) born in 2018 were> 90% sired …
[HTML][HTML] Removing data and using metafounders alleviates biases for all traits in Lacaune dairy sheep predictions
FL Macedo, JM Astruc, THE Meuwissen… - Journal of Dairy …, 2022 - Elsevier
Bias in dairy genetic evaluations, when it exists, has to be understood and properly
addressed. The origin of biases is not always clear. We analyzed 40 yr of records from the …
addressed. The origin of biases is not always clear. We analyzed 40 yr of records from the …
[HTML][HTML] Invited review: Unknown-parent groups and metafounders in single-step genomic BLUP
Single-step genomic BLUP (ssGBLUP) is a method for genomic prediction that integrates
matrices of pedigree (A) and genomic (G) relationships into a single unified additive …
matrices of pedigree (A) and genomic (G) relationships into a single unified additive …
Modeling missing pedigree in single-step genomic BLUP
The objective was to compare methods of modeling missing pedigree in single-step
genomic BLUP (ssGBLUP). Options for modeling missing pedigree included ignoring the …
genomic BLUP (ssGBLUP). Options for modeling missing pedigree included ignoring the …
[HTML][HTML] Effect of subdivision of the Lacaune dairy sheep breed on the accuracy of genomic prediction
Genomic selection was deployed in Lacaune dairy breed in 2015. Lacaune population split
in 1972 into 2 breeding companies with associated flocks, and there have been very few …
in 1972 into 2 breeding companies with associated flocks, and there have been very few …
Redefining and interpreting genomic relationships of metafounders
Metafounders are a useful concept to characterize relationships within and across
populations, and to help genetic evaluations because they help modelling the means and …
populations, and to help genetic evaluations because they help modelling the means and …
[HTML][HTML] Exploring unknown parent groups and metafounders in single-step genomic best linear unbiased prediction: Insights from a simulated cattle population
J Himmelbauer, H Schwarzenbacher, C Fuerst… - Journal of Dairy …, 2024 - Elsevier
This study explores how the metafounder (MF) concept enhances genetic evaluations in
dairy cattle populations using single-step genomic best linear unbiased prediction …
dairy cattle populations using single-step genomic best linear unbiased prediction …