The emergence of machine learning force fields in drug design

M Chen, X Jiang, L Zhang, X Chen… - Medicinal Research …, 2024 - Wiley Online Library
In the field of molecular simulation for drug design, traditional molecular mechanic force
fields and quantum chemical theories have been instrumental but limited in terms of …

Ab initio characterization of protein molecular dynamics with AI2BMD

T Wang, X He, M Li, Y Li, R Bi, Y Wang, C Cheng… - Nature, 2024 - nature.com
Biomolecular dynamics simulation is a fundamental technology for life sciences research,
and its usefulness depends on its accuracy and efficiency,–. Classical molecular dynamics …

Enhancing geometric representations for molecules with equivariant vector-scalar interactive message passing

Y Wang, T Wang, S Li, X He, M Li, Z Wang… - Nature …, 2024 - nature.com
Geometric deep learning has been revolutionizing the molecular modeling field. Despite the
state-of-the-art neural network models are approaching ab initio accuracy for molecular …

Pathways to a shiny future: Building the foundation for computational physical chemistry and biophysics in 2050

D Biriukov, R Vácha - ACS Physical Chemistry Au, 2024 - ACS Publications
In the last quarter-century, the field of molecular dynamics (MD) has undergone a
remarkable transformation, propelled by substantial enhancements in software, hardware …

Unraveling the Photocatalytic Mechanism of N2 Fixation on Single Ruthenium Sites

W Pei, L Hou, Z Wang, J Tian, Y Liu, Y Tu… - The Journal of …, 2024 - ACS Publications
Photocatalytic N2 fixation offers promise for ammonia synthesis, yet traditional
photocatalysts encounter challenges such as low efficiency and short carrier lifetimes …

Molecular basis for the activation of PAF receptor by PAF

W Fan, Y Xu, X He, P Luo, J Zhu, J Li, R Wang, Q Yuan… - Cell Reports, 2024 - cell.com
Platelet-activating factor (PAF) is a potent phospholipid mediator crucial in multiple
inflammatory and immune responses through binding and activating the PAF receptor …

Scaling Graph Neural Networks to Large Proteins

J Airas, B Zhang - Journal of Chemical Theory and Computation, 2024 - ACS Publications
Graph neural network (GNN) architectures have emerged as promising force field models,
exhibiting high accuracy in predicting complex energies and forces based on atomic …

Diffusion-adsorption synergistic mechanism in the adsorption of hierarchical porous carbon for antibiotics removal from water

H Xu, L Xu, Z Wang, F Wei, M Zhang - Colloids and Surfaces A …, 2025 - Elsevier
Hierarchical porous carbon (HPC) has gained extensive application in recent decades in the
fields including adsorption, catalysis, and electrochemistry. The incorporated meso/macro …

Application of modern artificial intelligence techniques in the development of organic molecular force fields

J Chen, Q Gao, M Huang, K Yu - Physical Chemistry Chemical Physics, 2025 - pubs.rsc.org
The molecular force field (FF) determines the accuracy of molecular dynamics (MD) and is
one of the major bottlenecks that limits the application of MD in molecular design. Recently …

High-throughput calculations and machine learning modeling of 17 O NMR in non-magnetic oxides

Z Li, B Zhao, H Zhang, Y Zhang - Faraday Discussions, 2025 - pubs.rsc.org
The only NMR-active oxygen isotope, oxygen-17 (17O), serves as a sensitive probe due to
its large chemical shift range, the electric field gradient at the oxygen site, and the …