Current understanding of the human microbiome
Our understanding of the link between the human microbiome and disease, including
obesity, inflammatory bowel disease, arthritis and autism, is rapidly expanding …
obesity, inflammatory bowel disease, arthritis and autism, is rapidly expanding …
Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis
Background Necrotizing enterocolitis (NEC) is a catastrophic disease of preterm infants, and
microbial dysbiosis has been implicated in its pathogenesis. Studies evaluating the …
microbial dysbiosis has been implicated in its pathogenesis. Studies evaluating the …
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
The body-wide human microbiome plays a role in health, but its full diversity remains
uncharacterized, particularly outside of the gut and in international populations. We …
uncharacterized, particularly outside of the gut and in international populations. We …
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
The number of microbial genomes sequenced each year is expanding rapidly, in part due to
genome-resolved metagenomic studies that routinely recover hundreds of draft-quality …
genome-resolved metagenomic studies that routinely recover hundreds of draft-quality …
[HTML][HTML] Anvi'o: an advanced analysis and visualization platform for 'omics data
Advances in high-throughput sequencing and 'omics technologies are revolutionizing
studies of naturally occurring microbial communities. Comprehensive investigations of …
studies of naturally occurring microbial communities. Comprehensive investigations of …
Microbial strain-level population structure and genetic diversity from metagenomes
Among the human health conditions linked to microbial communities, phenotypes are often
associated with only a subset of strains within causal microbial groups. Although it has been …
associated with only a subset of strains within causal microbial groups. Although it has been …
Clades of huge phages from across Earth's ecosystems
Bacteriophages typically have small genomes and depend on their bacterial hosts for
replication. Here we sequenced DNA from diverse ecosystems and found hundreds of …
replication. Here we sequenced DNA from diverse ecosystems and found hundreds of …
Schrödinger's microbes: tools for distinguishing the living from the dead in microbial ecosystems
While often obvious for macroscopic organisms, determining whether a microbe is dead or
alive is fraught with complications. Fields such as microbial ecology, environmental health …
alive is fraught with complications. Fields such as microbial ecology, environmental health …
Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants
R Berni Canani, N Sangwan, AT Stefka… - The ISME …, 2016 - academic.oup.com
Dietary intervention with extensively hydrolyzed casein formula supplemented with
Lactobacillus rhamnosus GG (EHCF+ LGG) accelerates tolerance acquisition in infants with …
Lactobacillus rhamnosus GG (EHCF+ LGG) accelerates tolerance acquisition in infants with …
Gut bacteria dysbiosis and necrotising enterocolitis in very low birthweight infants: a prospective case-control study
BB Warner, E Deych, Y Zhou, C Hall-Moore… - The Lancet, 2016 - thelancet.com
Background Gut bacteria might predispose to or protect from necrotising enterocolitis, a
severe illness linked to prematurity. In this observational prospective study we aimed to …
severe illness linked to prematurity. In this observational prospective study we aimed to …