Biomolecular simulation: a computational microscope for molecular biology
Molecular dynamics simulations capture the behavior of biological macromolecules in full
atomic detail, but their computational demands, combined with the challenge of …
atomic detail, but their computational demands, combined with the challenge of …
[HTML][HTML] The structural basis of secondary active transport mechanisms
LR Forrest, R Krämer, C Ziegler - Biochimica et Biophysica Acta (BBA) …, 2011 - Elsevier
Secondary active transporters couple the free energy of the electrochemical potential of one
solute to the transmembrane movement of another. As a basic mechanistic explanation for …
solute to the transmembrane movement of another. As a basic mechanistic explanation for …
Complete reconstruction of an enzyme-inhibitor binding process by molecular dynamics simulations
I Buch, T Giorgino… - Proceedings of the …, 2011 - National Acad Sciences
The understanding of protein–ligand binding is of critical importance for biomedical
research, yet the process itself has been very difficult to study because of its intrinsically …
research, yet the process itself has been very difficult to study because of its intrinsically …
Molecular simulation approaches to membrane proteins
Molecular simulations are an invaluable tool for understanding membrane proteins.
Improvements to both hardware and simulation methods have allowed access to …
Improvements to both hardware and simulation methods have allowed access to …
Transporter characterisation reveals aminoethylphosphonate mineralisation as a key step in the marine phosphorus redox cycle
The planktonic synthesis of reduced organophosphorus molecules, such as
alkylphosphonates and aminophosphonates, represents one half of a vast global oceanic …
alkylphosphonates and aminophosphonates, represents one half of a vast global oceanic …
Atomic-level characterization of transport cycle thermodynamics in the glycerol-3-phosphate: phosphate antiporter
Membrane transporters actively translocate their substrate by undergoing large-scale
structural transitions between inward-(IF) and outward-facing (OF) states ('alternating …
structural transitions between inward-(IF) and outward-facing (OF) states ('alternating …
The substrate-driven transition to an inward-facing conformation in the functional mechanism of the dopamine transporter
Background The dopamine transporter (DAT), a member of the neurotransmitter: Na+
symporter (NSS) family, terminates dopaminergic neurotransmission and is a major …
symporter (NSS) family, terminates dopaminergic neurotransmission and is a major …
Transient formation of water-conducting states in membrane transporters
Membrane transporters rely on highly coordinated structural transitions between major
conformational states for their function, to prevent simultaneous access of the substrate …
conformational states for their function, to prevent simultaneous access of the substrate …
Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in Two Corynebacterium pseudotuberculosis Strains
Background Corynebacterium pseudotuberculosi s, a Gram-positive, facultative intracellular
pathogen, is the etiologic agent of the disease known as caseous lymphadenitis (CL). CL …
pathogen, is the etiologic agent of the disease known as caseous lymphadenitis (CL). CL …
Protonation drives the conformational switch in the multidrug transporter LmrP
Multidrug antiporters of the major facilitator superfamily couple proton translocation to the
extrusion of cytotoxic molecules. The conformational changes that underlie the transport …
extrusion of cytotoxic molecules. The conformational changes that underlie the transport …