Systems biology: experimental design

C Kreutz, J Timmer - The FEBS journal, 2009 - Wiley Online Library
Experimental design has a long tradition in statistics, engineering and life sciences, dating
back to the beginning of the last century when optimal designs for industrial and agricultural …

Sepsis research in the next millennium: concentrate on the software rather than the hardware

T Tjardes, E Neugebauer - Shock, 2002 - journals.lww.com
Today the basic principles of septic conditions are understood. Nevertheless, sepsis
research has reached a critical point. To integrate our knowledge towards a consistent …

Modeling noisy time series: physiological tremor

J Timmer - International Journal of Bifurcation and Chaos, 1998 - World Scientific
Empirical time series often contain observational noise. We investigate the effect of this
noise on the estimated parameters of models fitted to the data. For data of physiological …

Parameter estimation in nonlinear delayed feedback systems from noisy data

W Horbelt, J Timmer, HU Voss - Physics Letters A, 2002 - Elsevier
We propose a method for the estimation of parameters of nonlinear delayed feedback
systems from a time series. Being based on the multiple shooting approach it is fairly robust …

Parameter identification techniques for partial differential equations

TG Müller, J Timmer - International Journal of Bifurcation and Chaos, 2004 - World Scientific
Many physical systems exhibiting nonlinear spatiotemporal dynamics can be modeled by
partial differential equations. Although information about the physical properties for many of …

Modeling the nonlinear dynamics of cellular signal transduction

J Timmer, TG Müller, I Swameye, O Sandra… - … Journal of Bifurcation …, 2004 - World Scientific
During the past decades the components involved in cellular signal transduction from
membrane receptors to gene activation in the nucleus have been studied in detail. Based on …

Calcium transients in develo** mouse skeletal muscle fibres

J Capote, P Bolaños, RP Schuhmeier… - The Journal of …, 2005 - Wiley Online Library
Ca2+ transients elicited by action potentials were measured using MagFluo‐4, at 20–22° C,
in intact muscle fibres enzymatically dissociated from mice of different ages (7, 10, 15 and 42 …

Parametric, nonparametric and parametric modelling of a chaotic circuit time series

J Timmer, H Rust, W Horbelt, HU Voss - Physics Letters A, 2000 - Elsevier
The determination of a differential equation underlying a measured time series is a
frequently arising task in nonlinear time series analysis. In the validation of a proposed …

Altered Ca2+ signaling in skeletal muscle fibers of the R6/2 mouse, a model of Huntington's disease

P Braubach, M Orynbayev, Z Andronache… - Journal of General …, 2014 - rupress.org
Huntington's disease (HD) is caused by an expanded CAG trinucleotide repeat within the
gene encoding the protein huntingtin. The resulting elongated glutamine (poly-Q) sequence …

The auxiliary subunit γ1 of the skeletal muscle L-type Ca2+ channel is an endogenous Ca2+ antagonist

Z Andronache, D Ursu, S Lehnert… - Proceedings of the …, 2007 - National Acad Sciences
Ca2+ channels play crucial roles in cellular signal transduction and are important targets of
pharmacological agents. They are also associated with auxiliary subunits exhibiting …