Bridging semantics and syntax with graph algorithms—state-of-the-art of extracting biomedical relations
Research on extracting biomedical relations has received growing attention recently, with
numerous biological and clinical applications including those in pharmacogenomics, clinical …
numerous biological and clinical applications including those in pharmacogenomics, clinical …
[HTML][HTML] COPIOUS: A gold standard corpus of named entities towards extracting species occurrence from biodiversity literature
Background Species occurrence records are very important in the biodiversity domain.
While several available corpora contain only annotations of species names or habitats and …
While several available corpora contain only annotations of species names or habitats and …
Linking entities through an ontology using word embeddings and syntactic re-ranking
Background Although there is an enormous number of textual resources in the biomedical
domain, currently, manually curated resources cover only a small part of the existing …
domain, currently, manually curated resources cover only a small part of the existing …
Classification and analysis of a large collection of in vivo bioassay descriptions
M Zwierzyna, JP Overington - PLoS computational biology, 2017 - journals.plos.org
Testing potential drug treatments in animal disease models is a decisive step of all
preclinical drug discovery programs. Yet, despite the importance of such experiments for …
preclinical drug discovery programs. Yet, despite the importance of such experiments for …
[PDF][PDF] Ontology-based categorization of bacteria and habitat entities using information retrieval techniques
A database which provides information about bacteria and their habitats in a comprehensive
and normalized way is crucial for applied microbiology studies. Having this information …
and normalized way is crucial for applied microbiology studies. Having this information …
BOUN-ISIK participation: an unsupervised approach for the named entity normalization and relation extraction of bacteria biotopes
This paper presents our participation to the Bacteria Biotope Task of the BioNLP Shared
Task 2019. Our participation includes two systems for the two subtasks of the Bacteria …
Task 2019. Our participation includes two systems for the two subtasks of the Bacteria …
Identifying bacterial biotope entities using sequence labeling: performance and feature analysis
J Mao, H Cui - Journal of the Association for Information …, 2018 - Wiley Online Library
Habitat information is important to biodiversity conservation and research. Extracting
bacterial biotope entities from scientific publications is important to large scale study of the …
bacterial biotope entities from scientific publications is important to large scale study of the …
Finding Association Between Diseases and Genes from Literature Abstracts
M Dongmei, J Shan… - Data Analysis and …, 2018 - manu44.magtech.com.cn
[Objective] This study tries to find association between genes and diseases from literature
abstracts, aiming to provide evidence for the prevention and treatment of diseases.[Methods] …
abstracts, aiming to provide evidence for the prevention and treatment of diseases.[Methods] …
The Problem of Named Entities Unification based on Geographical Ontologies
The subject of this research is to develop a system for extracting knowledge from both semi-
structured and unstructured data and filling with this system a knowledge base that would …
structured and unstructured data and filling with this system a knowledge base that would …
[CITATION][C] Ontology-based entity tagging and normalization in the biomedical domain
Zİ Karadeniz Erol - 2019 - … for Graduate Studies in Science and …