Viruses of archaea: structural, functional, environmental and evolutionary genomics

M Krupovic, V Cvirkaite-Krupovic, J Iranzo… - Virus research, 2018 - Elsevier
Viruses of archaea represent one of the most enigmatic parts of the virosphere. Most of the
characterized archaeal viruses infect extremophilic hosts and display remarkable diversity of …

What makes a megaplasmid?

JPJ Hall, J Botelho, A Cazares… - … Transactions of the …, 2022 - royalsocietypublishing.org
Naturally occurring plasmids come in different sizes. The smallest are less than a kilobase of
DNA, while the largest can be over three orders of magnitude larger. Historically, research …

Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids

D Kazlauskas, A Varsani, EV Koonin… - Nature …, 2019 - nature.com
Single-stranded (ss) DNA viruses are a major component of the earth virome. In particular,
the circular, Rep-encoding ssDNA (CRESS-DNA) viruses show high diversity and …

The universal tree of life: an update

P Forterre - Frontiers in microbiology, 2015 - frontiersin.org
Biologists used to draw schematic “universal” trees of life as metaphors illustrating the
history of life. It is indeed a priori possible to construct an organismal tree connecting the …

A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells

S Erdmann, B Tschitschko, L Zhong, MJ Raftery… - Nature …, 2017 - nature.com
The major difference between viruses and plasmids is the mechanism of transferring their
genomic information between host cells. Here, we describe the archaeal plasmid pR1SE …

Three-dimensional graphene aerogel mitigated the toxic impact of chloramphenicol wastewater on microorganisms in an EGSB reactor

Y Song, Z Zhang, Y Fang, M Sun, Y Jiang, D Li… - Science of The Total …, 2023 - Elsevier
Anaerobic treatment of chloramphenicol wastewater holds significant promise due to its
potential for bioenergy generation. However, the high concentration of organic matter and …

Genomes of abundant and widespread viruses from the deep ocean

CM Mizuno, R Ghai, A Saghaï, P López-García… - MBio, 2016 - journals.asm.org
The deep sea is a massive, largely oligotrophic ecosystem, stretched over nearly 65% of the
planet's surface. Deep-sea planktonic communities are almost completely dependent upon …

Viral origin of eukaryotic type IIA DNA topoisomerases

J Guglielmini, M Gaia, V Da Cunha, A Criscuolo… - Virus …, 2022 - academic.oup.com
Type II DNA topoisomerases of the family A (Topo IIAs) are present in all Bacteria (DNA
gyrase) and eukaryotes. In eukaryotes, they play a major role in transcription, DNA …

[PDF][PDF] Expanded dataset reveals the emergence and evolution of DNA gyrase in archaea

P Villain, R Catchpole, P Forterre… - Molecular biology …, 2022 - academic.oup.com
DNA gyrase is a type II topoisomerase with the unique capacity to introduce negative
supercoiling in DNA. In bacteria, DNA gyrase has an essential role in the homeostatic …

Towards functional characterization of archaeal genomic dark matter

KS Makarova, YI Wolf, EV Koonin - Biochemical Society …, 2019 - portlandpress.com
A substantial fraction of archaeal genes, from∼ 30% to as much as 80%, encode
'hypothetical'proteins or genomic 'dark matter'. Archaeal genomes typically contain a higher …