Nonequilibrium physics in biology

X Fang, K Kruse, T Lu, J Wang - Reviews of Modern Physics, 2019 - APS
Life is characterized by a myriad of complex dynamic processes allowing organisms to grow,
reproduce, and evolve. Physical approaches for describing systems out of thermodynamic …

[HTML][HTML] Cellular decision making and biological noise: from microbes to mammals

G Balázsi, A Van Oudenaarden, JJ Collins - Cell, 2011 - cell.com
Cellular decision making is the process whereby cells assume different, functionally
important and heritable fates without an associated genetic or environmental difference …

[SÁCH][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

Living synthelectronics: A New Era for bioelectronics powered by synthetic biology

J Sun, R Yang, Q Li, R Zhu, Y Jiang, L Zang… - Advanced …, 2024 - Wiley Online Library
Bioelectronics, which converges biology and electronics, has attracted great attention due to
their vital applications in human–machine interfaces. While traditional bioelectronic devices …

A quasi-integral controller for adaptation of genetic modules to variable ribosome demand

HH Huang, Y Qian, D Del Vecchio - Nature communications, 2018 - nature.com
The behavior of genetic circuits is often poorly predictable. A gene's expression level is not
only determined by the intended regulators, but also affected by changes in ribosome …

Synthetic analog computation in living cells

R Daniel, JR Rubens, R Sarpeshkar, TK Lu - Nature, 2013 - nature.com
A central goal of synthetic biology is to achieve multi-signal integration and processing in
living cells for diagnostic, therapeutic and biotechnology applications. Digital logic has been …

Regulation of heat-shock genes in bacteria: from signal sensing to gene expression output

D Roncarati, V Scarlato - FEMS microbiology reviews, 2017 - academic.oup.com
The heat-shock response is a mechanism of cellular protection against sudden adverse
environmental growth conditions and results in the prompt production of various heat-shock …

Synthetic biosensors for precise gene control and real-time monitoring of metabolites

JK Rogers, CD Guzman, ND Taylor… - Nucleic acids …, 2015 - academic.oup.com
Abstract Characterization and standardization of inducible transcriptional regulators has
transformed how scientists approach biology by allowing precise and tunable control of …

Robustness: mechanisms and consequences

J Masel, ML Siegal - Trends in genetics, 2009 - cell.com
Biological systems are robust to perturbation by mutations and environmental fluctuations.
New data are shedding light on the biochemical and network-level mechanisms responsible …

AphA and LuxR/HapR reciprocally control quorum sensing in vibrios

ST Rutherford, JC Van Kessel, Y Shao… - Genes & …, 2011 - genesdev.cshlp.org
Bacteria cycle between periods when they perform individual behaviors and periods when
they perform group behaviors. These transitions are controlled by a cell–cell communication …