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[HTML][HTML] A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data
Metagenomic sequencing provides a culture-independent avenue to investigate the
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
complex microbial communities by constructing metagenome-assembled genomes (MAGs) …
[HTML][HTML] Bioinformatics for NGS-based metagenomics and the application to biogas research
Metagenomics has proven to be one of the most important research fields for microbial
ecology during the last decade. Starting from 16S rRNA marker gene analysis for the …
ecology during the last decade. Starting from 16S rRNA marker gene analysis for the …
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
The cow rumen is adapted for the breakdown of plant material into energy and nutrients, a
task largely performed by enzymes encoded by the rumen microbiome. Here we present …
task largely performed by enzymes encoded by the rumen microbiome. Here we present …
MG-RAST, a metagenomics service for analysis of microbial community structure and function
Approaches in molecular biology, particularly those that deal with high-throughput
sequencing of entire microbial communities (the field of metagenomics), are rapidly …
sequencing of entire microbial communities (the field of metagenomics), are rapidly …
NCycDB: a curated integrative database for fast and accurate metagenomic profiling of nitrogen cycling genes
Motivation The nitrogen (N) cycle is a collection of important biogeochemical pathways in
the Earth ecosystem and has gained extensive foci in ecology and environmental studies …
the Earth ecosystem and has gained extensive foci in ecology and environmental studies …
Freshwater viral metagenome reveals novel and functional phage-borne antibiotic resistance genes
Background Antibiotic resistance developed by bacteria is a significant threat to global
health. Antibiotic resistance genes (ARGs) spread across different bacterial populations …
health. Antibiotic resistance genes (ARGs) spread across different bacterial populations …
Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming
Microbial decomposition of soil carbon in high-latitude tundra underlain with permafrost is
one of the most important, but poorly understood, potential positive feedbacks of …
one of the most important, but poorly understood, potential positive feedbacks of …
Ecophysiological Examination of the Lake Erie Microcystis Bloom in 2014: Linkages between Biology and the Water Supply Shutdown of Toledo, OH
Annual cyanobacterial blooms dominated by Microcystis have occurred in western Lake Erie
(US/Canada) during summer months since 1995. The production of toxins by bloom-forming …
(US/Canada) during summer months since 1995. The production of toxins by bloom-forming …
Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data
Microorganisms are ubiquitous in the biosphere, playing a crucial role in both
biogeochemistry of the planet and human health. However, identifying these …
biogeochemistry of the planet and human health. However, identifying these …
An evaluation of the accuracy and speed of metagenome analysis tools
Metagenome studies are becoming increasingly widespread, yielding important insights into
microbial communities covering diverse environments from terrestrial and aquatic …
microbial communities covering diverse environments from terrestrial and aquatic …