Deep learning as a tool for ecology and evolution
Deep learning is driving recent advances behind many everyday technologies, including
speech and image recognition, natural language processing and autonomous driving. It is …
speech and image recognition, natural language processing and autonomous driving. It is …
Navigating the temporal continuum of effective population size
Effective population size, Ne, is a key evolutionary parameter that determines the levels of
genetic variation and efficacy of selection. Estimation and interpretation of Ne are essential …
genetic variation and efficacy of selection. Estimation and interpretation of Ne are essential …
Extending approximate Bayesian computation with supervised machine learning to infer demographic history from genetic polymorphisms using DIYABC Random …
Simulation‐based methods such as approximate Bayesian computation (ABC) are well‐
adapted to the analysis of complex scenarios of populations and species genetic history. In …
adapted to the analysis of complex scenarios of populations and species genetic history. In …
Harnessing deep learning for population genetic inference
In population genetics, the emergence of large-scale genomic data for various species and
populations has provided new opportunities to understand the evolutionary forces that drive …
populations has provided new opportunities to understand the evolutionary forces that drive …
Toward an integrated machine learning model of a proteomics experiment
In recent years machine learning has made extensive progress in modeling many aspects of
mass spectrometry data. We brought together proteomics data generators, repository …
mass spectrometry data. We brought together proteomics data generators, repository …
[PDF][PDF] Deep learning in population genetics
Population genetics is transitioning into a data-driven discipline thanks to the availability of
large-scale genomic data and the need to study increasingly complex evolutionary …
large-scale genomic data and the need to study increasingly complex evolutionary …
Recent advances in generative adversarial networks for gene expression data: a comprehensive review
M Lee - Mathematics, 2023 - mdpi.com
The evolving field of generative artificial intelligence (GenAI), particularly generative deep
learning, is revolutionizing a host of scientific and technological sectors. One of the pivotal …
learning, is revolutionizing a host of scientific and technological sectors. One of the pivotal …
Detecting adaptive introgression in human evolution using convolutional neural networks
Studies in a variety of species have shown evidence for positively selected variants
introduced into a population via introgression from another, distantly related population—a …
introduced into a population via introgression from another, distantly related population—a …
On the prospect of achieving accurate joint estimation of selection with population history
As both natural selection and population history can affect genome-wide patterns of
variation, disentangling the contributions of each has remained as a major challenge in …
variation, disentangling the contributions of each has remained as a major challenge in …
An overview of deep generative models in functional and evolutionary genomics
Following the widespread use of deep learning for genomics, deep generative modeling is
also becoming a viable methodology for the broad field. Deep generative models (DGMs) …
also becoming a viable methodology for the broad field. Deep generative models (DGMs) …