Towards a comprehensive catalogue of validated and target-linked human enhancers

M Gasperini, JM Tome, J Shendure - Nature Reviews Genetics, 2020 - nature.com
The human gene catalogue is essentially complete, but we lack an equivalently vetted
inventory of bona fide human enhancers. Hundreds of thousands of candidate enhancers …

Enhancer redundancy in development and disease

EZ Kvon, R Waymack, M Gad, Z Wunderlich - Nature Reviews Genetics, 2021 - nature.com
Shadow enhancers are seemingly redundant transcriptional cis-regulatory elements that
regulate the same gene and drive overlap** expression patterns. Recent studies have …

Discovery of target genes and pathways at GWAS loci by pooled single-cell CRISPR screens

JA Morris, C Caragine, Z Daniloski, J Domingo, T Barry… - Science, 2023 - science.org
Most variants associated with complex traits and diseases identified by genome-wide
association studies (GWAS) map to noncoding regions of the genome with unknown effects …

Human gene essentiality

I Bartha, J Di Iulio, JC Venter, A Telenti - Nature Reviews Genetics, 2018 - nature.com
A gene can be defined as essential when loss of its function compromises viability of the
individual (for example, embryonic lethality) or results in profound loss of fitness. At the …

CRISPR/dCas9 tools: epigenetic mechanism and application in gene transcriptional regulation

R Cai, R Lv, X Shi, G Yang, J ** - International journal of molecular …, 2023 - mdpi.com
CRISPR/Cas9-mediated cleavage of DNA, which depends on the endonuclease activity of
Cas9, has been widely used for gene editing due to its excellent programmability and …

Quantifying the regulatory effect size of cis-acting genetic variation using allelic fold change

P Mohammadi, SE Castel, AA Brown… - Genome …, 2017 - genome.cshlp.org
Map** cis-acting expression quantitative trait loci (cis-eQTL) has become a popular
approach for characterizing proximal genetic regulatory variants. In this paper, we describe …

[HTML][HTML] Advancements in CRISPR screens for the development of cancer immunotherapy strategies

YR Li, Z Lyu, Y Tian, Y Fang, Y Zhu, Y Chen… - Molecular Therapy …, 2023 - cell.com
CRISPR screen technology enables systematic and scalable interrogation of gene function
by using the CRISPR-Cas9 system to perturb gene expression. In the field of cancer …

A high-resolution genome-wide CRISPR/Cas9 viability screen reveals structural features and contextual diversity of the human cell-essential proteome

T Bertomeu, J Coulombe-Huntington… - … and cellular biology, 2018 - Taylor & Francis
To interrogate genes essential for cell growth, proliferation and survival in human cells, we
carried out a genome-wide clustered regularly interspaced short palindromic repeat …

Enhancer transcription detected in the nascent transcriptomic landscape of bread wheat

Y **e, Y Chen, Z Li, J Zhu, M Liu, Y Zhang, Z Dong - Genome Biology, 2022 - Springer
The precise spatiotemporal gene expression is orchestrated by enhancers that lack general
sequence features and thus are difficult to be computationally identified. By nascent RNA …

Molecular radiation biology

J Reindl, AM Abrantes, V Ahire, O Azimzadeh… - Radiobiology …, 2023 - Springer
Various exogeneous and endogenous factors constantly cause damages in the
biomolecules within a cell. For example, per day, 10,000–100,000 molecular lesions occur …