TOR signaling and nutrient sensing

T Dobrenel, C Caldana, J Hanson… - Annual review of …, 2016 - annualreviews.org
All living organisms rely on nutrients to sustain cell metabolism and energy production,
which in turn need to be adjusted based on available resources. The evolutionarily …

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

L López-Maury, S Marguerat, J Bähler - Nature Reviews Genetics, 2008 - nature.com
Organisms are constantly exposed to a wide range of environmental changes, including
both short-term changes during their lifetime and longer-term changes across generations …

Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria

S Hui, JM Silverman, SS Chen, DW Erickson… - Molecular systems …, 2015 - embopress.org
A central aim of cell biology was to understand the strategy of gene expression in response
to the environment. Here, we study gene expression response to metabolic challenges in …

Development of a robust and repeatable UPLC− MS method for the long-term metabolomic study of human serum

E Zelena, WB Dunn, D Broadhurst… - Analytical …, 2009 - ACS Publications
A method for performing untargeted metabolomic analysis of human serum has been
developed based on protein precipitation followed by Ultra Performance Liquid …

Addressing accuracy and precision issues in iTRAQ quantitation

NA Karp, W Huber, PG Sadowski… - Molecular & Cellular …, 2010 - mcponline.org
iTRAQ (isobaric tags for relative or absolute quantitation) is a mass spectrometry technology
that allows quantitative comparison of protein abundance by measuring peak intensities of …

Iron behaving badly: inappropriate iron chelation as a major contributor to the aetiology of vascular and other progressive inflammatory and degenerative diseases

DB Kell - BMC medical genomics, 2009 - Springer
Background The production of peroxide and superoxide is an inevitable consequence of
aerobic metabolism, and while these particular'reactive oxygen species'(ROSs) can exhibit a …

Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast

MJ Brauer, C Huttenhower, EM Airoldi… - Molecular biology of …, 2008 - molbiolcell.org
We studied the relationship between growth rate and genome-wide gene expression, cell
cycle progression, and glucose metabolism in 36 steady-state continuous cultures limited by …

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

MJ Herrgård, N Swainston, P Dobson, WB Dunn… - Nature …, 2008 - nature.com
Genomic data allow the large-scale manual or semi-automated assembly of metabolic
network reconstructions, which provide highly curated organism-specific knowledge bases …

Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress

AP Gasch, FB Yu, J Hose, LE Escalante, M Place… - PLoS …, 2017 - journals.plos.org
From bacteria to humans, individual cells within isogenic populations can show significant
variation in stress tolerance, but the nature of this heterogeneity is not clear. To investigate …

The metabolome 18 years on: a concept comes of age

DB Kell, SG Oliver - Metabolomics, 2016 - Springer
Background The term 'metabolome'was introduced to the scientific literature in September
1998. Aim and key scientific concepts of the review To mark its 18-year-old 'coming of age' …