Advances in data‐independent acquisition mass spectrometry towards comprehensive digital proteome landscape

RB Kitata, JC Yang, YJ Chen - Mass spectrometry reviews, 2023 - Wiley Online Library
The data‐independent acquisition mass spectrometry (DIA‐MS) has rapidly evolved as a
powerful alternative for highly reproducible proteome profiling with a unique strength of …

dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications

Z Li, S Li, M Luo, JH Jhong, W Li, L Yao… - Nucleic acids …, 2022 - academic.oup.com
Protein post-translational modifications (PTMs) play an important role in different cellular
processes. In view of the importance of PTMs in cellular functions and the massive data …

Photoelectrochemical biosensor for histone deacetylase Sirt1 detection based on polyaspartic acid-engaged and triggered redox cycling amplification and enhanced …

L Gao, Y Zhou, L Cao, X Cui, Y Zheng, H Yin… - Analytical …, 2022 - ACS Publications
A photoelectrochemical (PEC) biosensor was established for histone deacetylase Sirt1
detection based on the polyaspartic acid (PASP)-mediated redox cycling amplification and …

Mass spectrometry contribution to pediatric cancers research

M Agostini, P Traldi, M Hamdan - Medicina, 2023 - mdpi.com
For over four decades, mass spectrometry-based methods have provided a wealth of
information relevant to various challenges in the field of cancers research. These challenges …

DNA–Peptide Interaction-Modulated Charge Reversal in Biomimetic Nanochannels for Simple and Efficient Detection of Histone Deacetylases

L Shi, K Ying, L Sha, Y Zhang, L Sun, G Li - Analytical Chemistry, 2024 - ACS Publications
Protein acetylation, a fundamental post-translational modification, plays a critical role in the
regulation of gene expression and cellular processes. Monitoring histone deacetylases …

Untargeted histone profiling during naive conversion uncovers conserved modification markers between mouse and human

L De Clerck, J Taelman, M Popovic, S Willems… - Scientific reports, 2019 - nature.com
Recent progress has enabled the conversion of primed human embryonic stem cells
(hESCs) to the naive state of pluripotency, resembling the well-characterized naive mouse …

A large scale mass spectrometry-based histone screening for assessing epigenetic developmental toxicity

S Verhelst, B Van Puyvelde, S Willems, S Daled… - Scientific reports, 2022 - nature.com
Toxicoepigenetics is an emerging field that studies the toxicological impact of compounds
on protein expression through heritable, non-genetic mechanisms, such as histone post …

Histone sample preparation for bottom-up mass spectrometry: A roadmap to informed decisions

S Daled, S Willems, B Van Puyvelde, L Corveleyn… - Proteomes, 2021 - mdpi.com
Histone-based chromatin organization enabled eukaryotic genome complexity. This
epigenetic control mechanism allowed for the differentiation of stable gene-expression and …

[HTML][HTML] Comprehensive histone epigenetics: A mass spectrometry based screening assay to measure epigenetic toxicity

S Verhelst, L De Clerck, S Willems, B Van Puyvelde… - MethodsX, 2020 - Elsevier
Evidence of the involvement of epigenetics in pathologies such as cancer, diabetes, and
neurodegeneration has increased global interest in epigenetic modifications. For nearly …

An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia

L Provez, B Van Puyvelde, L Corveleyn… - Scientific data, 2022 - nature.com
The holistic nature of omics studies makes them ideally suited to generate hypotheses on
health and disease. Sequencing-based genomics and mass spectrometry (MS)-based …