Vibrio spp.: Life Strategies, Ecology, and Risks in a Changing Environment

A Sampaio, V Silva, P Poeta, F Aonofriesei - Diversity, 2022 - mdpi.com
Vibrios are ubiquitous bacteria in aquatic systems, especially marine ones, and belong to
the Gammaproteobacteria class, the most diverse class of Gram-negative bacteria. The main …

Microbial community structure and its functional implications

JA Fuhrman - Nature, 2009 - nature.com
Marine microbial communities are engines of globally important processes, such as the
marine carbon, nitrogen and sulphur cycles. Recent data on the structures of these …

Differentiation strategies of soil rare and abundant microbial taxa in response to changing climatic regimes

Y Liang, X **ao, EE Nuccio, M Yuan… - Environmental …, 2020 - Wiley Online Library
Despite the important roles of soil microbes, especially the most diverse rare taxa in
maintaining community diversity and multifunctionality, how different climate regimes alter …

Methods for normalizing microbiome data: an ecological perspective

DT McKnight, R Huerlimann, DS Bower… - Methods in Ecology …, 2019 - Wiley Online Library
Microbiome sequencing data often need to be normalized due to differences in read depths,
and recommendations for microbiome analyses generally warn against using proportions or …

Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes

Y Mo, W Zhang, J Yang, Y Lin, Z Yu, S Lin - The ISME journal, 2018 - academic.oup.com
Unraveling the relative importance of ecological processes regulating microbial community
structure is a central goal in microbial ecology. Here, we used high-throughput sequencing …

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

DPR Herlemann, M Labrenz, K Jürgens… - The ISME …, 2011 - academic.oup.com
Salinity is a major factor controlling the distribution of biota in aquatic systems, and most
aquatic multicellular organisms are either adapted to life in saltwater or freshwater …

Biodiversity of vibrios

FL Thompson, T Iida, J Swings - Microbiology and molecular …, 2004 - journals.asm.org
Vibrios are ubiquitous and abundant in the aquatic environment. A high abundance of
vibrios is also detected in tissues and/or organs of various marine algae and animals, eg …

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques

R Amann, BM Fuchs - Nature Reviews Microbiology, 2008 - nature.com
The ribosomal-RNA (rRNA) approach to microbial evolution and ecology has become an
integral part of environmental microbiology. Based on the patchy conservation of rRNA …

Ecology of the rare microbial biosphere of the Arctic Ocean

PE Galand, EO Casamayor, DL Kirchman… - Proceedings of the …, 2009 - pnas.org
Understanding the role of microbes in the oceans has focused on taxa that occur in high
abundance; yet most of the marine microbial diversity is largely determined by a long tail of …

Fluorescence in situ hybridization for the detection of prokaryotes

H Daims, K Stoecker, M Wagner - Molecular microbial ecology, 2004 - taylorfrancis.com
Determining the structure and dynamics of microbial communities is a core component of
microbial ecology. Traditionally, microbiologists used timeconsuming cultivation-based …