Concepts of artificial intelligence for computer-assisted drug discovery

X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …

Reorganization of cerebral networks after stroke: new insights from neuroimaging with connectivity approaches

C Grefkes, GR Fink - Brain, 2011 - academic.oup.com
The motor system comprises a network of cortical and subcortical areas interacting via
excitatory and inhibitory circuits, thereby governing motor behaviour. The balance within the …

[HTML][HTML] A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen

J Moffat, DA Grueneberg, X Yang, SY Kim, AM Kloepfer… - Cell, 2006 - cell.com
To enable arrayed or pooled loss-of-function screens in a wide range of mammalian cell
types, including primary and nondividing cells, we are develo** lentiviral short hairpin …

Noise in biology

LS Tsimring - Reports on Progress in Physics, 2014 - iopscience.iop.org
Noise permeates biology on all levels, from the most basic molecular, sub-cellular
processes to the dynamics of tissues, organs, organisms and populations. The functional …

Reverse engineering of regulatory networks in human B cells

K Basso, AA Margolin, G Stolovitzky, U Klein… - Nature …, 2005 - nature.com
Cellular phenotypes are determined by the differential activity of networks linking
coregulated genes. Available methods for the reverse engineering of such networks from …

Advances to Bayesian network inference for generating causal networks from observational biological data

J Yu, VA Smith, PP Wang, AJ Hartemink… - …, 2004 - academic.oup.com
Motivation: Network inference algorithms are powerful computational tools for identifying
putative causal interactions among variables from observational data. Bayesian network …

Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks

D Husmeier - Bioinformatics, 2003 - academic.oup.com
Motivation: Bayesian networks have been applied to infer genetic regulatory interactions
from microarray gene expression data. This inference problem is particularly hard in that …

Inferring cellular networks–a review

F Markowetz, R Spang - BMC bioinformatics, 2007 - Springer
In this review we give an overview of computational and statistical methods to reconstruct
cellular networks. Although this area of research is vast and fast develo**, we show that …

SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms

T Van den Bulcke, K Van Leemput, B Naudts… - BMC …, 2006 - Springer
Background The development of algorithms to infer the structure of gene regulatory
networks based on expression data is an important subject in bioinformatics research …

Inferring gene networks from time series microarray data using dynamic Bayesian networks

SY Kim, S Imoto, S Miyano - Briefings in bioinformatics, 2003 - academic.oup.com
Abstract Dynamic Bayesian networks (DBNs) are considered as a promising model for
inferring gene networks from time series microarray data. DBNs have overtaken Bayesian …