Lake sedimentary DNA research on past terrestrial and aquatic biodiversity: Overview and recommendations

E Capo, C Giguet-Covex, A Rouillard, K Nota… - Quaternary, 2021 - mdpi.com
The use of lake sedimentary DNA to track the long-term changes in both terrestrial and
aquatic biota is a rapidly advancing field in paleoecological research. Although largely …

[HTML][HTML] Fungal mycobiome drives IL-33 secretion and type 2 immunity in pancreatic cancer

A Alam, E Levanduski, P Denz, HS Villavicencio… - Cancer cell, 2022 - cell.com
TH 2 cells and innate lymphoid cells 2 (ILC2) can stimulate tumor growth by secreting pro-
tumorigenic cytokines such as interleukin-4 (IL-4), IL-5, and IL-13. However, the …

Gut microbiota utilize immunoglobulin A for mucosal colonization

GP Donaldson, MS Ladinsky, KB Yu, JG Sanders… - Science, 2018 - science.org
The immune system responds vigorously to microbial infection while permitting lifelong
colonization by the microbiome. Mechanisms that facilitate the establishment and stability of …

iNEXT: an R package for rarefaction and extrapolation of species diversity (H ill numbers)

TC Hsieh, KH Ma, A Chao - Methods in ecology and evolution, 2016 - Wiley Online Library
Hill numbers (or the effective number of species) have been increasingly used to quantify
the species/taxonomic diversity of an assemblage. The sample‐size‐and coverage‐based …

Long-term man–environment interactions in the Bolivian Amazon: 8000 years of vegetation dynamics

SO Brugger, E Gobet, JFN van Leeuwen… - Quaternary Science …, 2016 - Elsevier
Only few studies documenting the vegetation history of the Llanos de Moxos, one of the
largest seasonally flooded wetland areas in South America, are available and little is known …

Evidence for co-selection of antibiotic resistance genes and mobile genetic elements in metal polluted urban soils

Y Zhao, T Cocerva, S Cox, S Tardif, JQ Su… - Science of the Total …, 2019 - Elsevier
Antibiotic resistance genes (ARGs) constitute emerging environmental pollutants and pose
risks to public health. Toxic metals are known to select for metal-resistant bacteria in metal …

Microclimate and habitat heterogeneity as the major drivers of beetle diversity in dead wood

S Seibold, C Bässler, R Brandl, B Büche… - Journal of Applied …, 2016 - Wiley Online Library
Resource availability and habitat heterogeneity are principle drivers of biodiversity, but their
individual roles often remain unclear since both factors are usually correlated. The …

Temporal response of the human virome to immunosuppression and antiviral therapy

I De Vlaminck, KK Khush, C Strehl, B Kohli, H Luikart… - Cell, 2013 - cell.com
There are few substantive methods to measure the health of the immune system, and the
connection between immune strength and the viral component of the microbiome is poorly …

Long-term forest soil warming alters microbial communities in temperate forest soils

KM DeAngelis, G Pold, BD Topçuoğlu… - Frontiers in …, 2015 - frontiersin.org
Soil microbes are major drivers of soil carbon cycling, yet we lack an understanding of how
climate warming will affect microbial communities. Three ongoing field studies at the …

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure

I Laforest-Lapointe, C Messier, SW Kembel - Microbiome, 2016 - Springer
Background The increasing awareness of the role of phyllosphere microbial communities in
plant health calls for a greater understanding of their structure and dynamics in natural …