Where less may be more: how the rare biosphere pulls ecosystems strings

A Jousset, C Bienhold, A Chatzinotas… - The ISME …, 2017 - academic.oup.com
Rare species are increasingly recognized as crucial, yet vulnerable components of Earth's
ecosystems. This is also true for microbial communities, which are typically composed of a …

Ecology and exploration of the rare biosphere

MDJ Lynch, JD Neufeld - Nature Reviews Microbiology, 2015 - nature.com
The profound influence of microorganisms on human life and global biogeochemical cycles
underlines the value of studying the biogeography of microorganisms, exploring microbial …

Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities

T Dai, D Wen, CT Bates, L Wu, X Guo, S Liu… - Nature …, 2022 - nature.com
Nutrient scarcity is pervasive for natural microbial communities, affecting species
reproduction and co-existence. However, it remains unclear whether there are general rules …

Metabolic flexibility allows bacterial habitat generalists to become dominant in a frequently disturbed ecosystem

YJ Chen, PM Leung, JL Wood, SK Bay… - The ISME …, 2021 - academic.oup.com
Ecological theory suggests that habitat disturbance differentially influences distributions of
habitat generalist and specialist species. While well-established for macroorganisms, this …

Community assembly processes of the microbial rare biosphere

X Jia, F Dini-Andreote, JF Salles - Trends in microbiology, 2018 - cell.com
Our planet teems with microorganisms that often present a skewed abundance distribution
in a local community, with relatively few dominant species coexisting alongside a high …

Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity

A Shade, SE Jones, JG Caporaso, J Handelsman… - MBio, 2014 - Am Soc Microbiol
Microbial communities typically contain many rare taxa that make up the majority of the
observed membership, yet the contribution of this microbial “rare biosphere” to community …

Assembly processes of abundant and rare microbial communities in orchard soil under a cover crop at different periods

Z Zhao, Y Ma, T Feng, X Kong, Z Wang, W Zheng… - Geoderma, 2022 - Elsevier
Soil microorganisms play key roles in agricultural ecosystems. However, little is known
about their dynamic diversity patterns and community assembly processes, especially in the …

Biogeography and ecological diversity patterns of rare and abundant bacteria in oil‐contaminated soils

S Jiao, W Chen, G Wei - Molecular ecology, 2017 - Wiley Online Library
Revealing the biogeographies and ecologies of rare and abundant microorganisms is
crucial to understand ecosystem diversity and function. In this study, we investigated the …

Patterns of rare and abundant marine microbial eukaryotes

R Logares, S Audic, D Bass, L Bittner, C Boutte… - Current Biology, 2014 - cell.com
Background Biological communities are normally composed of a few abundant and many
rare species. This pattern is particularly prominent in microbial communities, in which most …

Global dispersion and local diversification of the methane seep microbiome

SE Ruff, JF Biddle, AP Teske, K Knittel… - Proceedings of the …, 2015 - National Acad Sciences
Methane seeps are widespread seafloor ecosystems shaped by the emission of gas from
seabed reservoirs. The microorganisms inhabiting methane seeps transform the chemical …