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A new look at state-space models for neural data
L Paninski, Y Ahmadian, DG Ferreira… - Journal of computational …, 2010 - Springer
State space methods have proven indispensable in neural data analysis. However, common
methods for performing inference in state-space models with non-Gaussian observations …
methods for performing inference in state-space models with non-Gaussian observations …
Neural data science: accelerating the experiment-analysis-theory cycle in large-scale neuroscience
L Paninski, JP Cunningham - Current opinion in neurobiology, 2018 - Elsevier
Highlights•Modern recording technologies are creating data at a scale and complexity that
demand rigorous data analytical approaches.•Neural data science is an essential bridge …
demand rigorous data analytical approaches.•Neural data science is an essential bridge …
Computational models in the age of large datasets
Highlights•Computational models will prove increasingly useful for understanding large
datasets.•Substantial challenges exist for fitting detailed models to data.•Conceptual and …
datasets.•Substantial challenges exist for fitting detailed models to data.•Conceptual and …
A state space approach for piecewise-linear recurrent neural networks for identifying computational dynamics from neural measurements
D Durstewitz - PLoS computational biology, 2017 - journals.plos.org
The computational and cognitive properties of neural systems are often thought to be
implemented in terms of their (stochastic) network dynamics. Hence, recovering the system …
implemented in terms of their (stochastic) network dynamics. Hence, recovering the system …
Inferring synaptic inputs from spikes with a conductance-based neural encoding model
Descriptive statistical models of neural responses generally aim to characterize the map**
from stimuli to spike responses while ignoring biophysical details of the encoding process …
from stimuli to spike responses while ignoring biophysical details of the encoding process …
Advanced data analysis in neuroscience
D Durstewitz - Bernstein Series in Computational Neuroscience …, 2017 - Springer
Bernstein Series in Computational Neuroscience reflects the Bernstein Network's broad
research and teaching activities, including models of neural circuits and higher brain …
research and teaching activities, including models of neural circuits and higher brain …
Real-time particle filtering and smoothing algorithms for detecting abrupt changes in neural ensemble spike activity
Sequential change-point detection from time series data is a common problem in many
neuroscience applications, such as seizure detection, anomaly detection, and pain …
neuroscience applications, such as seizure detection, anomaly detection, and pain …
Bayesian methods for event analysis of intracellular currents
Background Investigation of neural circuit functioning often requires statistical interpretation
of events in subthreshold electrophysiological recordings. This problem is non-trivial …
of events in subthreshold electrophysiological recordings. This problem is non-trivial …
Estimation of excitatory and inhibitory synaptic conductance variations in motoneurons during locomotor-like rhythmic activity
R Kobayashi, H Nishimaru, H Nishijo - Neuroscience, 2016 - Elsevier
The rhythmic activity of motoneurons (MNs) that underlies locomotion in mammals is
generated by synaptic inputs from the locomotor network in the spinal cord. Thus, the …
generated by synaptic inputs from the locomotor network in the spinal cord. Thus, the …
Optimal control for estimation in partially observed elliptic and hypoelliptic linear stochastic differential equations
Multi-dimensional stochastic differential equations (SDEs) are a powerful tool to describe
dynamics of phenomena that change over time. We focus on the parametric estimation of …
dynamics of phenomena that change over time. We focus on the parametric estimation of …