A new look at state-space models for neural data

L Paninski, Y Ahmadian, DG Ferreira… - Journal of computational …, 2010 - Springer
State space methods have proven indispensable in neural data analysis. However, common
methods for performing inference in state-space models with non-Gaussian observations …

Neural data science: accelerating the experiment-analysis-theory cycle in large-scale neuroscience

L Paninski, JP Cunningham - Current opinion in neurobiology, 2018 - Elsevier
Highlights•Modern recording technologies are creating data at a scale and complexity that
demand rigorous data analytical approaches.•Neural data science is an essential bridge …

Computational models in the age of large datasets

T O'Leary, AC Sutton, E Marder - Current opinion in neurobiology, 2015 - Elsevier
Highlights•Computational models will prove increasingly useful for understanding large
datasets.•Substantial challenges exist for fitting detailed models to data.•Conceptual and …

A state space approach for piecewise-linear recurrent neural networks for identifying computational dynamics from neural measurements

D Durstewitz - PLoS computational biology, 2017 - journals.plos.org
The computational and cognitive properties of neural systems are often thought to be
implemented in terms of their (stochastic) network dynamics. Hence, recovering the system …

Inferring synaptic inputs from spikes with a conductance-based neural encoding model

KW Latimer, F Rieke, JW Pillow - Elife, 2019 - elifesciences.org
Descriptive statistical models of neural responses generally aim to characterize the map**
from stimuli to spike responses while ignoring biophysical details of the encoding process …

Advanced data analysis in neuroscience

D Durstewitz - Bernstein Series in Computational Neuroscience …, 2017 - Springer
Bernstein Series in Computational Neuroscience reflects the Bernstein Network's broad
research and teaching activities, including models of neural circuits and higher brain …

Real-time particle filtering and smoothing algorithms for detecting abrupt changes in neural ensemble spike activity

S Hu, Q Zhang, J Wang, Z Chen - Journal of …, 2018 - journals.physiology.org
Sequential change-point detection from time series data is a common problem in many
neuroscience applications, such as seizure detection, anomaly detection, and pain …

Bayesian methods for event analysis of intracellular currents

J Merel, B Shababo, A Naka, H Adesnik… - Journal of Neuroscience …, 2016 - Elsevier
Background Investigation of neural circuit functioning often requires statistical interpretation
of events in subthreshold electrophysiological recordings. This problem is non-trivial …

Estimation of excitatory and inhibitory synaptic conductance variations in motoneurons during locomotor-like rhythmic activity

R Kobayashi, H Nishimaru, H Nishijo - Neuroscience, 2016 - Elsevier
The rhythmic activity of motoneurons (MNs) that underlies locomotion in mammals is
generated by synaptic inputs from the locomotor network in the spinal cord. Thus, the …

Optimal control for estimation in partially observed elliptic and hypoelliptic linear stochastic differential equations

Q Clairon, A Samson - Statistical Inference for Stochastic Processes, 2020 - Springer
Multi-dimensional stochastic differential equations (SDEs) are a powerful tool to describe
dynamics of phenomena that change over time. We focus on the parametric estimation of …