Isolation by environment

IJ Wang, GS Bradburd - Molecular ecology, 2014 - Wiley Online Library
The interactions between organisms and their environments can shape distributions of
spatial genetic variation, resulting in patterns of isolation by environment (IBE) in which …

Advances and opportunities in malaria population genomics

DE Neafsey, AR Taylor, BL MacInnis - Nature Reviews Genetics, 2021 - nature.com
Almost 20 years have passed since the first reference genome assemblies were published
for Plasmodium falciparum, the deadliest malaria parasite, and Anopheles gambiae, the …

dartr: An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing

B Gruber, PJ Unmack, OF Berry… - Molecular ecology …, 2018 - Wiley Online Library
Although vast technological advances have been made and genetic software packages are
growing in number, it is not a trivial task to analyse SNP data. We announce a new r …

Defining the speciation continuum

S Stankowski, M Ravinet - Evolution, 2021 - academic.oup.com
A primary roadblock to our understanding of speciation is that it usually occurs over a
timeframe that is too long to study from start to finish. The idea of a speciation continuum …

Visualizing spatial population structure with estimated effective migration surfaces

D Petkova, J Novembre, M Stephens - Nature genetics, 2016 - nature.com
Genetic data often exhibit patterns broadly consistent with'isolation by distance'—a
phenomenon where genetic similarity decays with geographic distance. In a heterogeneous …

[KNIHA][B] Ecological speciation

P Nosil - 2012 - books.google.com
The origin of biological diversity, via the formation of new species, can be inextricably linked
to adaptation to the ecological environment. Specifically, ecological processes are central to …

Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference

ABA Shafer, CR Peart, S Tusso… - Methods in Ecology …, 2017 - Wiley Online Library
Restriction site‐associated DNA sequencing (RAD‐seq) provides high‐resolution
population genomic data at low cost, and has become an important component in ecological …

Mantel test in population genetics

JAF Diniz-Filho, TN Soares, JS Lima… - … and molecular biology, 2013 - SciELO Brasil
The comparison of genetic divergence or genetic distances, estimated by pairwise F ST and
related statistics, with geographical distances by Mantel test is one of the most popular …

genepop'007: a complete re‐implementation of the genepop software for Windows and Linux

F Rousset - Molecular ecology resources, 2008 - Wiley Online Library
This note summarizes developments of the genepop software since its first description in
1995, and in particular those new to version 4.0: an extended input format, several …

Genetics in geographically structured populations: defining, estimating and interpreting FST

KE Holsinger, BS Weir - Nature Reviews Genetics, 2009 - nature.com
Wright's F-statistics, and especially F ST, provide important insights into the evolutionary
processes that influence the structure of genetic variation within and among populations …