Automated processing of zebrafish imaging data: a survey

R Mikut, T Dickmeis, W Driever, P Geurts… - Zebrafish, 2013 - liebertpub.com
Due to the relative transparency of its embryos and larvae, the zebrafish is an ideal model
organism for bioimaging approaches in vertebrates. Novel microscope technologies allow …

Automated morphological feature assessment for zebrafish embryo developmental toxicity screens

E Teixidó, TR Kießling, E Krupp… - Toxicological …, 2019 - academic.oup.com
Detection of developmental phenotypes in zebrafish embryos typically involves a visual
assessment and scoring of morphological features by an individual researcher. Subjective …

Surface functionalisation-dependent adverse effects of metal nanoparticles and nanoplastics in zebrafish embryos

I Hansjosten, M Takamiya, J Rapp, L Reiner… - Environmental …, 2022 - pubs.rsc.org
The growing number of manufactured nanomaterials (MNMs) used in consumer products
and industrial applications is leading to increased exposures whose consequences are not …

High-throughput screening of zebrafish embryos using automated heart detection and imaging

W Spomer, A Pfriem, R Alshut, S Just… - Journal of laboratory …, 2012 - journals.sagepub.com
Over the past decade, the zebrafish has become a key model organism in genetic
screenings and drug discovery. A number of genes have been identified to affect the …

Phenotype classification of zebrafish embryos by supervised learning

N Jeanray, R Marée, B Pruvot, O Stern, P Geurts… - PloS one, 2015 - journals.plos.org
Zebrafish is increasingly used to assess biological properties of chemical substances and
thus is becoming a specific tool for toxicological and pharmacological studies. The effects of …

The MATLAB toolbox SciXMiner: User's manual and programmer's guide

R Mikut, A Bartschat, W Doneit, JÁG Ordiano… - arxiv preprint arxiv …, 2017 - arxiv.org
The Matlab toolbox SciXMiner is designed for the visualization and analysis of time series
and features with a special focus to classification problems. It was developed at the Institute …

Automated phenotype pattern recognition of zebrafish for high-throughput screening

M Schutera, T Dickmeis, M Mione, R Peravali… - …, 2016 - Taylor & Francis
Over the last years, the zebrafish (Danio rerio) has become a key model organism in genetic
and chemical screenings. A growing number of experiments and an expanding interest in …

A versatile and low-cost open source pipetting robot for automation of toxicological and ecotoxicological bioassays

S Steffens, L Nüßer, TB Seiler, N Ruchter… - PLoS …, 2017 - journals.plos.org
In the past decades, bioassays and whole-organism bioassay have become important tools
not only in compliance testing of industrial chemicals and plant protection products, but also …

Automatic localization of interest points in zebrafish images with tree-based methods

O Stern, R Marée, J Aceto, N Jeanray, M Muller… - Pattern Recognition in …, 2011 - Springer
In many biological studies, scientists assess effects of experimental conditions by visual
inspection of microscopy images. They are able to observe whether a protein is expressed …

Information fusion of image analysis, video object tracking, and data mining of biological images using the open source MATLAB toolbox Gait-CAD

J Stegmaier, R Alshut, M Reischl… - Biomedical Engineering …, 2012 - degruyter.com
Automated imaging has become a commonplace and widespread technique for researchers
aiming to increase both biological and medical knowledge. Systematic high-throughput …