Automated processing of zebrafish imaging data: a survey
Due to the relative transparency of its embryos and larvae, the zebrafish is an ideal model
organism for bioimaging approaches in vertebrates. Novel microscope technologies allow …
organism for bioimaging approaches in vertebrates. Novel microscope technologies allow …
Automated morphological feature assessment for zebrafish embryo developmental toxicity screens
E Teixidó, TR Kießling, E Krupp… - Toxicological …, 2019 - academic.oup.com
Detection of developmental phenotypes in zebrafish embryos typically involves a visual
assessment and scoring of morphological features by an individual researcher. Subjective …
assessment and scoring of morphological features by an individual researcher. Subjective …
Surface functionalisation-dependent adverse effects of metal nanoparticles and nanoplastics in zebrafish embryos
I Hansjosten, M Takamiya, J Rapp, L Reiner… - Environmental …, 2022 - pubs.rsc.org
The growing number of manufactured nanomaterials (MNMs) used in consumer products
and industrial applications is leading to increased exposures whose consequences are not …
and industrial applications is leading to increased exposures whose consequences are not …
High-throughput screening of zebrafish embryos using automated heart detection and imaging
W Spomer, A Pfriem, R Alshut, S Just… - Journal of laboratory …, 2012 - journals.sagepub.com
Over the past decade, the zebrafish has become a key model organism in genetic
screenings and drug discovery. A number of genes have been identified to affect the …
screenings and drug discovery. A number of genes have been identified to affect the …
Phenotype classification of zebrafish embryos by supervised learning
Zebrafish is increasingly used to assess biological properties of chemical substances and
thus is becoming a specific tool for toxicological and pharmacological studies. The effects of …
thus is becoming a specific tool for toxicological and pharmacological studies. The effects of …
The MATLAB toolbox SciXMiner: User's manual and programmer's guide
The Matlab toolbox SciXMiner is designed for the visualization and analysis of time series
and features with a special focus to classification problems. It was developed at the Institute …
and features with a special focus to classification problems. It was developed at the Institute …
Automated phenotype pattern recognition of zebrafish for high-throughput screening
Over the last years, the zebrafish (Danio rerio) has become a key model organism in genetic
and chemical screenings. A growing number of experiments and an expanding interest in …
and chemical screenings. A growing number of experiments and an expanding interest in …
A versatile and low-cost open source pipetting robot for automation of toxicological and ecotoxicological bioassays
S Steffens, L Nüßer, TB Seiler, N Ruchter… - PLoS …, 2017 - journals.plos.org
In the past decades, bioassays and whole-organism bioassay have become important tools
not only in compliance testing of industrial chemicals and plant protection products, but also …
not only in compliance testing of industrial chemicals and plant protection products, but also …
Automatic localization of interest points in zebrafish images with tree-based methods
In many biological studies, scientists assess effects of experimental conditions by visual
inspection of microscopy images. They are able to observe whether a protein is expressed …
inspection of microscopy images. They are able to observe whether a protein is expressed …
Information fusion of image analysis, video object tracking, and data mining of biological images using the open source MATLAB toolbox Gait-CAD
Automated imaging has become a commonplace and widespread technique for researchers
aiming to increase both biological and medical knowledge. Systematic high-throughput …
aiming to increase both biological and medical knowledge. Systematic high-throughput …