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RNA structure: advances and assessment of 3D structure prediction
Biological functions of RNA molecules are dependent upon sustained specific three-
dimensional (3D) structures of RNA, with or without the help of proteins. Understanding of …
dimensional (3D) structures of RNA, with or without the help of proteins. Understanding of …
When will RNA get its AlphaFold moment?
The protein structure prediction problem has been solved for many types of proteins by
AlphaFold. Recently, there has been considerable excitement to build off the success of …
AlphaFold. Recently, there has been considerable excitement to build off the success of …
Assessment of three‐dimensional RNA structure prediction in CASP15
The prediction of RNA three‐dimensional structures remains an unsolved problem. Here, we
report assessments of RNA structure predictions in CASP15, the first CASP exercise that …
report assessments of RNA structure predictions in CASP15, the first CASP exercise that …
Integrating end-to-end learning with deep geometrical potentials for ab initio RNA structure prediction
RNAs are fundamental in living cells and perform critical functions determined by their
tertiary architectures. However, accurate modeling of 3D RNA structure remains a …
tertiary architectures. However, accurate modeling of 3D RNA structure remains a …
Has AlphaFold 3 reached its success for RNAs?
Predicting the 3D structure of RNA is a significant challenge despite ongoing advancements
in the field. Although AlphaFold has successfully addressed this problem for proteins, RNA …
in the field. Although AlphaFold has successfully addressed this problem for proteins, RNA …
[PDF][PDF] New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure
RNAComposer is a fully automated, web-interfaced system for RNA 3D structure prediction,
freely available at http://rnacomposer. cs. put. poznan. pl/and http://rnacomposer. ibch …
freely available at http://rnacomposer. cs. put. poznan. pl/and http://rnacomposer. ibch …
RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers
RNA-Puzzles is a collective endeavor dedicated to the advancement and improvement of
RNA 3D structure prediction. With agreement from crystallographers, the RNA structures are …
RNA 3D structure prediction. With agreement from crystallographers, the RNA structures are …
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
RNA-Puzzles is a collective experiment in blind 3D RNA structure prediction. We report here
a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch …
a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch …
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures
This paper is a report of a second round of RNA-Puzzles, a collective and blind experiment
in three-dimensional (3D) RNA structure prediction. Three puzzles, Puzzles 5, 6, and 10 …
in three-dimensional (3D) RNA structure prediction. Three puzzles, Puzzles 5, 6, and 10 …
RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools
Significant improvements have been made in the efficiency and accuracy of RNA 3D
structure prediction methods during the succeeding challenges of RNA-Puzzles, a …
structure prediction methods during the succeeding challenges of RNA-Puzzles, a …