3D chromatin architecture and transcription regulation in cancer

S Deng, Y Feng, S Pauklin - Journal of hematology & oncology, 2022 - Springer
Chromatin has distinct three-dimensional (3D) architectures important in key biological
processes, such as cell cycle, replication, differentiation, and transcription regulation. In turn …

CTCF: a Swiss-army knife for genome organization and transcription regulation

L Braccioli, E de Wit - Essays in biochemistry, 2019 - portlandpress.com
Orchestrating vertebrate genomes require a complex interplay between the linear
composition of the genome and its 3D organization inside the nucleus. This requires the …

Epigenetic reprogramming in early animal development

Z Du, K Zhang, W **e - Cold Spring Harbor Perspectives …, 2022 - cshperspectives.cshlp.org
Dramatic nuclear reorganization occurs during early development to convert terminally
differentiated gametes to a totipotent zygote, which then gives rise to an embryo. Aberrant …

Cell cycle length governs heterochromatin reprogramming during early development in non-mammalian vertebrates

HS Fukushima, T Ikeda, S Ikeda, H Takeda - EMBO reports, 2024 - embopress.org
Heterochromatin marks such as H3K9me3 undergo global erasure and re-establishment
after fertilization, and the proper reprogramming of H3K9me3 is essential for early …

Single-cell Hi-C data analysis: safety in numbers

AA Galitsyna, MS Gelfand - Briefings in bioinformatics, 2021 - academic.oup.com
Over the past decade, genome-wide assays for chromatin interactions in single cells have
enabled the study of individual nuclei at unprecedented resolution and throughput. Current …

A landscape of complex tandem repeats within individual human genomes

K Ichikawa, R Kawahara, T Asano… - Nature …, 2023 - nature.com
Markedly expanded tandem repeats (TRs) have been correlated with~ 60 diseases. TR
diversity has been considered a clue toward understanding missing heritability. However …