3D chromatin architecture and transcription regulation in cancer
Chromatin has distinct three-dimensional (3D) architectures important in key biological
processes, such as cell cycle, replication, differentiation, and transcription regulation. In turn …
processes, such as cell cycle, replication, differentiation, and transcription regulation. In turn …
CTCF: a Swiss-army knife for genome organization and transcription regulation
Orchestrating vertebrate genomes require a complex interplay between the linear
composition of the genome and its 3D organization inside the nucleus. This requires the …
composition of the genome and its 3D organization inside the nucleus. This requires the …
Epigenetic reprogramming in early animal development
Dramatic nuclear reorganization occurs during early development to convert terminally
differentiated gametes to a totipotent zygote, which then gives rise to an embryo. Aberrant …
differentiated gametes to a totipotent zygote, which then gives rise to an embryo. Aberrant …
Cell cycle length governs heterochromatin reprogramming during early development in non-mammalian vertebrates
HS Fukushima, T Ikeda, S Ikeda, H Takeda - EMBO reports, 2024 - embopress.org
Heterochromatin marks such as H3K9me3 undergo global erasure and re-establishment
after fertilization, and the proper reprogramming of H3K9me3 is essential for early …
after fertilization, and the proper reprogramming of H3K9me3 is essential for early …
Single-cell Hi-C data analysis: safety in numbers
Over the past decade, genome-wide assays for chromatin interactions in single cells have
enabled the study of individual nuclei at unprecedented resolution and throughput. Current …
enabled the study of individual nuclei at unprecedented resolution and throughput. Current …
A landscape of complex tandem repeats within individual human genomes
K Ichikawa, R Kawahara, T Asano… - Nature …, 2023 - nature.com
Markedly expanded tandem repeats (TRs) have been correlated with~ 60 diseases. TR
diversity has been considered a clue toward understanding missing heritability. However …
diversity has been considered a clue toward understanding missing heritability. However …