Analyzing proteins from single cells by tandem mass spectrometry (MS) has recently
become technically feasible. While such analysis has the potential to accurately quantify …

The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

Galaxy is a mature, browser accessible workbench for scientific computing. It enables
scientists to share, analyze and visualize their own data, with minimal technical …

Abstract Galaxy (homepage: https://galaxyproject. org, main public server: https://usegalaxy.
org) is a web-based scientific analysis platform used by tens of thousands of scientists …

Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for
monitoring biodiversity in ecology. However, taxa identifications produced through …

The increasing availability of genomic resequencing data sets and high-quality reference
genomes across the tree of life present exciting opportunities for comparative population …

This paper is a methodological guide to using machine learning in the spatial context. It
provides an overview of the existing spatial toolbox proposed in the literature: unsupervised …

Research data is accumulating rapidly and with it the challenge of fully reproducible
science. As a consequence, implementation of high-quality management of scientific data …

We have adopted an open bioinformatics ecosystem to address the challenges of
bioinformatics implementation in public health laboratories (PHLs). Bioinformatics …

Motivation Pangenome graphs offer a comprehensive way of capturing genomic variability
across multiple genomes. However, current construction methods often introduce biases …