Transposable elements and the evolution of genome size in eukaryotes

MG Kidwell - Genetica, 2002 - Springer
It is generally accepted that the wide variation in genome size observed among eukaryotic
species is more closely correlated with the amount of repetitive DNA than with the number of …

[HTML][HTML] An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice

T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat - Genes, 2020 - mdpi.com
Gene duplication is an important evolutionary mechanism allowing to provide new genetic
material and thus opportunities to acquire new gene functions for an organism, with major …

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

… genomeanalysis@ tgr. org genomeanalysis@ gsf. de - nature, 2000 - nature.com
The flowering plant Arabidopsis thaliana is an important model system for identifying genes
and determining their functions. Here we report the analysis of the genomic sequence of …

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

Z Xu, H Wang - Nucleic acids research, 2007 - academic.oup.com
Long terminal repeat retrotransposons (LTR elements) are ubiquitous eukaryotic
transposable elements. They play important roles in the evolution of genes and genomes …

[BOEK][B] DNA fingerprinting in plants: principles, methods, and applications

K Weising, H Nybom, M Pfenninger, K Wolff, G Kahl - 2005 - taylorfrancis.com
Given the explosive development of new molecular marker techniques over the last decade,
newcomers and experts alike in the field of DNA fingerprinting will find an easy-to-follow …

Endogenous and silencing-associated small RNAs in plants

C Llave, KD Kasschau, MA Rector… - The Plant Cell, 2002 - academic.oup.com
A large set of endogenous small RNAs of predominantly 21 to 24 nucleotides was identified
in Arabidopsis. These small RNAs resembled micro-RNAs from animals and were similar in …

Virus-like transposons cross the species barrier and drive the evolution of genetic incompatibilities

SA Widen, IC Bes, A Koreshova, P Pliota, D Krogull… - Science, 2023 - science.org
Horizontal gene transfer, the movement of genetic material between species, has been
reported across all major eukaryotic lineages. However, the underlying mechanisms of …

Pack-MULE transposable elements mediate gene evolution in plants

N Jiang, Z Bao, X Zhang, SR Eddy, SR Wessler - Nature, 2004 - nature.com
Mutator-like transposable elements (MULEs) are found in many eukaryotic genomes and
are especially prevalent in higher plants,,. In maize, rice and Arabidopsis a few MULEs were …

Bursts of retrotransposition reproduced in Arabidopsis

S Tsukahara, A Kobayashi, A Kawabe, O Mathieu… - Nature, 2009 - nature.com
Retrotransposons, which proliferate by reverse transcription of RNA intermediates, comprise
a major portion of plant genomes,. Plants often change the genome size and organization …

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize

M Morgante, S Brunner, G Pea, K Fengler, A Zuccolo… - Nature …, 2005 - nature.com
We report a whole-genome comparison of gene content in allelic BAC contigs from two
maize inbred lines. Genic content polymorphisms involve as many as 10,000 sequences …