Advances in hydrogen/deuterium exchange mass spectrometry and the pursuit of challenging biological systems

EI James, TA Murphree, C Vorauer, JR Engen… - Chemical …, 2021 - ACS Publications
Solution-phase hydrogen/deuterium exchange (HDX) coupled to mass spectrometry (MS) is
a widespread tool for structural analysis across academia and the biopharmaceutical …

Developments in hydrogen/deuterium exchange mass spectrometry

JR Engen, T Botzanowski, D Peterle… - Analytical …, 2020 - ACS Publications
Chemistry” on HDX MS. 1 That review covered HDX MS applications from January 2012
through June 2014 and described the publications in terms of sector, geography, and topic …

Automating data analysis for hydrogen/deuterium exchange mass spectrometry using data-independent acquisition methodology

F Filandr, V Sarpe, S Raval, DA Crowder… - Nature …, 2024 - nature.com
We present a hydrogen/deuterium exchange workflow coupled to tandem mass
spectrometry (HX-MS2) that supports the acquisition of peptide fragment ions alongside their …

Computational Tools for Hydrogen–Deuterium Exchange Mass Spectrometry Data Analysis

M Stofella, A Grimaldi, JH Smit, J Claesen… - Chemical …, 2024 - ACS Publications
Hydrogen–deuterium exchange (HDX) has become a pivotal method for investigating the
structural and dynamic properties of proteins. The versatility and sensitivity of mass …

OligoR: a native HDX/MS data processing application dedicated to oligonucleotides

E Largy, M Ranz - Analytical Chemistry, 2023 - ACS Publications
Hydrogen–deuterium exchange mass spectrometry (HDX/MS) is increasingly used to study
the dynamics of protein conformation. Coupled to native MS, HDX can also characterize the …

High-resolution hydrogen–deuterium protection factors from sparse mass spectrometry data validated by nuclear magnetic resonance measurements

M Stofella, SP Skinner, F Sobott… - Journal of the …, 2022 - ACS Publications
Experimental measurement of time-dependent spontaneous exchange of amide protons
with deuterium of the solvent provides information on the structure and dynamical structural …

Stability of antibody drug conjugate formulations evaluated using solid-state hydrogen-deuterium exchange mass spectrometry

E Cho, BM Mayhugh, JM Srinivasan, GA Sacha… - Journal of …, 2021 - Elsevier
Antibody drug conjugates (ADCs) have been at the forefront in cancer therapy due to their
target specificity. All the FDA approved ADCs are developed in lyophilized form to minimize …

[HTML][HTML] Computational methods in mass spectrometry-based structural proteomics for studying protein structure, dynamics, and interactions

S Na, E Paek - Computational and Structural Biotechnology Journal, 2020 - Elsevier
Mass spectrometry (MS) has made enormous contributions to comprehensive protein
identification and quantification in proteomics. MS is also gaining momentum for structural …

Rigorous Analysis of Multimodal HDX-MS Spectra

LM Tuttle, EI James, F Georgescauld… - Journal of the …, 2025 - ACS Publications
An inherent strength of hydrogen/deuterium exchange coupled to mass spectrometry (HDX-
MS) is its ability to detect the presence of multiple conformational states of a protein, which …

Protein turnover models for LC–MS data of heavy water metabolic labeling

RG Sadygov - Briefings in Bioinformatics, 2022 - academic.oup.com
Protein turnover is vital for cellular functioning and is often associated with the
pathophysiology of a variety of diseases. Metabolic labeling with heavy water followed by …